Miyakogusa Predicted Gene

Lj0g3v0198769.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0198769.1 Non Characterized Hit- tr|I1MPU8|I1MPU8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,71.38,0,seg,NULL,CUFF.12593.1
         (1173 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g045357.1 | shortage in chiasmata protein, putative | HC |...  1461   0.0  

>Medtr6g045357.1 | shortage in chiasmata protein, putative | HC |
            chr6:16283994-16291769 | 20130731
          Length = 1596

 Score = 1461 bits (3781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 744/1108 (67%), Positives = 854/1108 (77%), Gaps = 22/1108 (1%)

Query: 40   GECDIVQSVELKKLLSDCIPLPDNLPEEFTSSNLLQHGSSKQGCREQLPCREQLPERDAE 99
            G+CD+ QS EL+KLLSD I  PDN   EF +   +++GSS +G R+QL       E  AE
Sbjct: 471  GKCDLQQSEELQKLLSDSISQPDNQRVEFAAGKAVENGSSNEGRRKQLQ------EIKAE 524

Query: 100  RASLFFKSMSEISNLEYFLNPKYVTDKANCNFAVESTNANVNIPKDTSTEFKAGLQSHGW 159
            RASL FKSMSEISN +YFLNP+  T K +C F  +S NANV+IPK TST  KAGLQS GW
Sbjct: 525  RASLLFKSMSEISNFDYFLNPQKATSKESCCFGADSANANVSIPKVTSTALKAGLQSQGW 584

Query: 160  HTVLHRIKLSDNIVAITAYFEKCYLAILQSDTELTKMYNPDVDYFKLLSFPKRKLFEYHV 219
            HTVLH++KLSDNIVA+  YFEK Y+AILQSDTEL K +  DV YF+LLS  K KL E+HV
Sbjct: 585  HTVLHKVKLSDNIVALARYFEKSYVAILQSDTELAKTHKLDVHYFELLSLQKHKLIEFHV 644

Query: 220  NGNNMAFIALSAIKQAAWYLSFYGLNPACLYVDKLCQNLDYLKSRLGFLQSLIKYENRKV 279
            NGNNMAFI LSAIKQA WYL FYGLNPACLYVDKLCQN+DYLKSRLG LQSLIK ENRK+
Sbjct: 645  NGNNMAFIVLSAIKQAVWYLCFYGLNPACLYVDKLCQNIDYLKSRLGVLQSLIKDENRKM 704

Query: 280  DGSYTIAHPSLTIVKEILQSSIKSNSLKALIVAEEVFWWXXXXXXXXXXXXXXXXXDSYR 339
            + + ++AH SL  V+EILQ++IK +SLKALIVAEEVFW                   SYR
Sbjct: 705  ESNISMAHSSLITVREILQANIKHDSLKALIVAEEVFWGSLKSLLLFLGLSFSELNTSYR 764

Query: 340  NQPYASNLPEDTNTKMKELLNSDCLLVSHKHVSLLFPFNKFGIILEYGGPYGSSRISELS 399
             QPYA+NLP DTNTKMK LL+SDCLLVS+++VS LFPFNKFGIILEYGGP  SSRISEL 
Sbjct: 765  CQPYANNLPGDTNTKMKGLLSSDCLLVSYRNVSPLFPFNKFGIILEYGGPNDSSRISELP 824

Query: 400  PNSVGKPHLHFLTIDLDDHAASKALCEGVETPPNTGMLLESETPLIFYHKESMANQKLER 459
             NSVG P LHFLT++LDDHAA KA C+GVE PP + MLLE+E PL+F HKESM N+KLER
Sbjct: 825  SNSVGLPTLHFLTVELDDHAALKAFCQGVELPPYSEMLLETEAPLLFNHKESMVNRKLER 884

Query: 460  LLNFCPVEQSYGIESSKVAPETDNFVPVITAAQSEHGNQSLEPFSGSVIIVNTQNIDKEM 519
            LLNF PVEQ Y I SSK A E DNFVP+I A +++H +QSLE FSGSVIIVNTQN+DKEM
Sbjct: 885  LLNFYPVEQRYDINSSKTALEADNFVPLIPAVKTDHSHQSLESFSGSVIIVNTQNVDKEM 944

Query: 520  IVSRRSSYQVILAMEKGGVQVVERDLDLPVDIIISSGICLAWYDSRNLGKKGTPATEASS 579
            IVSRRSSYQVILAMEKGG+QVVERDLDLPVDII+SS +CLAWYDSRNLGKK TPATEASS
Sbjct: 945  IVSRRSSYQVILAMEKGGIQVVERDLDLPVDIILSSAVCLAWYDSRNLGKKATPATEASS 1004

Query: 580  SLPLCIDNIATDVLTLLSFYFRGCFLVFEGEFDFLSIVMESSDGLYAAAASLGIDLQIFF 639
            SL LC++NIATD+L LLSFYFRGCFLVFEGEF+FLS VME SDG YAAA SLGIDLQIFF
Sbjct: 1005 SLSLCVENIATDILPLLSFYFRGCFLVFEGEFNFLSTVMEFSDGFYAAATSLGIDLQIFF 1064

Query: 640  SYSPELSNEVILSCIKNAAKLTRGLYPKMPDSVTLAESFLTQFPGINPLTAHSILSSGAM 699
            SYSPEL+NEV+++CIK+ A LTRGLYPKMPDSVTLAESFLTQFPGINPLTAHSILS G  
Sbjct: 1065 SYSPELTNEVMINCIKSTAILTRGLYPKMPDSVTLAESFLTQFPGINPLTAHSILSLGVT 1124

Query: 700  LNEFLECSHEQRMRVLENYDVPEESLSLFSVFCKYGEREDSKSIMTXXXXXXXXXXXXXR 759
            L+EFL  SHEQR+RVLE Y VPEESLSL SVFC+YGEREDSKSIMT             R
Sbjct: 1125 LHEFLAWSHEQRIRVLEKYHVPEESLSLLSVFCRYGEREDSKSIMTDCSSSVSSGPDSDR 1184

Query: 760  CHRYQVDNKRKRKNPISSHQKDEQYFDELLQFKTLNQEVEAIPDSSTLPKPFDLGMSKAA 819
            C  YQ DNKRKR NP+ + Q      DELLQFKTLN + EAIPD STL  PF+LGMS+ A
Sbjct: 1185 CRFYQADNKRKRTNPVINGQN-----DELLQFKTLNHD-EAIPDPSTLQNPFNLGMSRDA 1238

Query: 820  GRSSDLEKASLCMSDFFDQKQPITASTMRNPSRVYPSSRNSKAPRISEQVEQPCLSFKNN 879
            GRS DL K+SL  +D F QKQ   A+T RN SRV PSS N KA +ISE +  P  S KN 
Sbjct: 1239 GRSRDLGKSSLYTNDAFYQKQRNIATTTRNHSRVSPSSWNCKASQISEHLGHPSFSLKNK 1298

Query: 880  ELVQNEILDIDLMGKSMNWNSLSSSEKLHEDIRGEVVDLTDSPLLDESFPMSDFMYFPNL 939
            EL QNEI+D  L     NW++L + EKLHEDIRGEVVDLT+SPLLDESF +SD MYFPNL
Sbjct: 1299 ELSQNEIMDTGL-----NWHNLGNFEKLHEDIRGEVVDLTNSPLLDESFSISDSMYFPNL 1353

Query: 940  VTDTEKDQLRKSKIARRLSFNNRSHPATNSSEIWKSLQDTAREVDDYPEPDFGKDVFPLD 999
            +T+TEKD +RK+KI R+LSF+N   P TNS  IW S+ DT  E+D + EPDFGKD FPLD
Sbjct: 1354 MTETEKDHMRKNKIVRKLSFDNSIQPETNS--IWGSMNDTG-EIDHHEEPDFGKDAFPLD 1410

Query: 1000 FKPPENVGLTQVAMTNLQGLHFQDRMSHLSETXXXXXXXXXXXXXXXXWTIDFLNKVKEK 1059
            F P  ++  T V   NL G+ FQ+ MS+LSET                WT +F+NKVKEK
Sbjct: 1411 FNPHGSIDSTPV--RNLGGITFQEGMSYLSETPLSRVRRSGTPLKHSPWTTEFINKVKEK 1468

Query: 1060 SKLRQKSLSYQKSRPCFGYQGNVSKVPKRRSPSIIEFFKYQPGRTPGNFPEQKRQKQSGQ 1119
            SKLRQKS+        FGYQGN+SK  K+RSPSI+E F+YQP +TPGN PEQKRQKQS +
Sbjct: 1469 SKLRQKSVLSGNISSYFGYQGNISKASKKRSPSILESFRYQPSKTPGNIPEQKRQKQSAK 1528

Query: 1120 SSNSVKKGRYSTCVPSWTPDDKRSTKAL 1147
            SSNS KKGRY+  + + TP+DKRST+++
Sbjct: 1529 SSNSAKKGRYAVPISARTPNDKRSTQSI 1556



 Score =  114 bits (286), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 75/117 (64%), Gaps = 7/117 (5%)

Query: 1   MSNWYLNICAKIDLKNQDIAGNSFDNRNVVFDLVFCCDI-GECDIVQSVELKKLLSDCIP 59
           +SNWY  I AKID+ N D    S DNR  + +LVF  D  G CD+  S EL+KLLS+CI 
Sbjct: 358 ISNWYHTIWAKIDMNNHDFGEESLDNRKSILELVFFGDTSGACDLQNSEELQKLLSECIS 417

Query: 60  LPDNLPEEFTSSNLLQHGSSKQGCREQLPCREQLPERDAERASLFFKSMSEISNLEY 116
             DN   EF ++ LL+HGSS +G      CREQLPE+ A+RAS  FKS SEI NL +
Sbjct: 418 QLDNRLVEFAANTLLEHGSSNKG------CREQLPEKKAQRASSLFKSTSEIRNLSH 468