Miyakogusa Predicted Gene

Lj0g3v0198759.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0198759.3 Non Characterized Hit- tr|Q2RAU3|Q2RAU3_ORYSJ
Transcription initiation factor IIE, putative
OS=Oryza,56.76,6e-19,HTH_TFE_IIE,Transcription factor TFE/TFIIEalpha
HTH domain; coiled-coil,NULL; no description,Winged ,CUFF.12595.3
         (207 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g077000.1 | transcription initiation factor IIE, putative ...   330   6e-91

>Medtr8g077000.1 | transcription initiation factor IIE, putative |
           HC | chr8:32692655-32682881 | 20130731
          Length = 479

 Score =  330 bits (846), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 176/223 (78%), Positives = 186/223 (83%), Gaps = 18/223 (8%)

Query: 1   MIEPYNKLVKLAARAFYDDLTSKGDNQPKSGRSDNRGIAVVVLDALTRRQWVREEDLAKD 60
           MIEPYNKLVKLAARAFYDD TSKGD+QPK+GRSDNRGI VV+LDALTR+QWVREEDLAKD
Sbjct: 1   MIEPYNKLVKLAARAFYDDPTSKGDDQPKTGRSDNRGIDVVILDALTRKQWVREEDLAKD 60

Query: 61  LKLHTKQLRRTLRFFEEEKFITRDHRRETAKGAKIYSAAVAANADGQHTGKEGEEKVKLH 120
           LKL+TK+LRR L+ F EEK ITRD R+ETAKGAKIYSAAVAA AD    GK GEEKVKLH
Sbjct: 61  LKLNTKELRRRLQSFAEEKIITRDQRKETAKGAKIYSAAVAATAD-ATKGKMGEEKVKLH 119

Query: 121 THSYCCLDYAQIYDVTRYRLHRMKHKLKDELENKNTLQEYICPN-------------CGK 167
           THSYCCLDYAQIYDV RYRLH MKHKLKDELENKNT+QEYIC N              G 
Sbjct: 120 THSYCCLDYAQIYDVVRYRLHHMKHKLKDELENKNTVQEYICTNYILFVWMYFCFIILGN 179

Query: 168 R----YNALDALRLISFEDEDFHCESCNGKLEVESDKIAAQEG 206
                YNALDALRLISFEDEDFHCE CNGKLEVESDK+AAQEG
Sbjct: 180 FNYFIYNALDALRLISFEDEDFHCEHCNGKLEVESDKLAAQEG 222