Miyakogusa Predicted Gene
- Lj0g3v0197519.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0197519.1 Non Characterized Hit- tr|F6GU18|F6GU18_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,63.18,0,ZINC
FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN,NULL; CALCIUM-ACTIVATED
CHLORIDE CHANNEL REGULAT,CUFF.12509.1
(258 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g094930.1 | zinc finger, C3HC4 type (RING finger) protein ... 332 2e-91
Medtr4g058700.1 | zinc finger, C3HC4 type (RING finger) protein ... 295 3e-80
Medtr1g094830.1 | zinc finger, C3HC4 type (RING finger) protein ... 256 2e-68
Medtr1g094830.2 | zinc finger, C3HC4 type (RING finger) protein ... 256 2e-68
Medtr8g085360.1 | hypothetical protein | LC | chr8:35364598-3536... 75 8e-14
Medtr3g111210.1 | zinc finger (C3HC4-type RING finger) family pr... 62 4e-10
>Medtr2g094930.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr2:40529714-40527813 | 20130731
Length = 633
Score = 332 bits (852), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 200/261 (76%), Gaps = 5/261 (1%)
Query: 1 MSVVVQELQIEVRCFNPCLQLSSVKAGSYQTRLINNARMACIKVGDLYAEEERDFFITMN 60
+SVVVQ+L +EVRC LQLSSVKAGSYQ+ L NNARMA IK GDLYAEEERDF +T+N
Sbjct: 374 LSVVVQDLHVEVRCAQSRLQLSSVKAGSYQSTLTNNARMASIKAGDLYAEEERDFLVTLN 433
Query: 61 VPADDSSDEMSLLIVRGLYRDPTTKEMVGLDVTSEVKIQRPDIARGVAVSIEVDKQRNRN 120
VP + SSDEMSLLI+ +Y DP TK M GLDVTSEVKIQRP++AR VSIEVD+QRNR
Sbjct: 434 VPVEKSSDEMSLLIITCIYSDPITK-MEGLDVTSEVKIQRPNVARDQVVSIEVDRQRNRL 492
Query: 121 LATEVMTEARVKAERGDFVAAVSTLESCQRALSETVSARAGDSLCVSLSAELKEMQERME 180
ATE M EARV+AERGD AA+S LE CQRALSET+SA+AGD LC SLSAELKEMQ+RM
Sbjct: 493 QATEAMAEARVEAERGDLTAAISVLERCQRALSETISAQAGDPLCTSLSAELKEMQDRMA 552
Query: 181 NRRIYEQSGRAYLLSGISSHSSQRAXX---XXXXXXXXXXYQTASQVDMITRSQTMLMRT 237
RR+YE+SGRAY+LSG+SSH QRA YQT S DM++RSQT+L+RT
Sbjct: 553 TRRVYEESGRAYVLSGMSSHLGQRATARGDSTDSTSFVRAYQTPSMADMVSRSQTILVRT 612
Query: 238 TQ-PGNSLPPSKSFNDRLGRK 257
Q GN L P+KSF+ R RK
Sbjct: 613 PQSSGNILRPTKSFSGRQQRK 633
>Medtr4g058700.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr4:21590095-21595659 | 20130731
Length = 704
Score = 295 bits (755), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 156/253 (61%), Positives = 192/253 (75%), Gaps = 8/253 (3%)
Query: 1 MSVVVQELQIEVRCFNPCLQLSSVKAGSYQTRLINNARMACIKVGDLYAEEERDFFITMN 60
+SVVVQELQ+E+RC +P LQL SVKAGSY+T L + RMA I VGDLYAEEERDF +T+N
Sbjct: 447 LSVVVQELQLEIRCVHPQLQLGSVKAGSYRTSLTTDGRMASITVGDLYAEEERDFLVTVN 506
Query: 61 VPADDSSDEMSLLIVRGLYRDPTTKEMVGLDVTSEVKIQRPDIARGVAVSIEVDKQRNRN 120
VP D S+DEMSLL V+G YRDP TKEM+ L+ TSEVKI+RP+I R + VSIEVD+Q NR
Sbjct: 507 VPIDSSNDEMSLLNVKGFYRDPITKEMIALEETSEVKIERPNIGRELVVSIEVDRQLNRL 566
Query: 121 LATEVMTEARVKAERGDFVAAVSTLESCQRALSETVSARAGDSLCVSLSAELKEMQERME 180
A E M EARV AERG+ AAVS L+SC + LSE+VSA+AGD LC++L+AEL++MQERM
Sbjct: 567 RAAEAMAEARVAAERGELSAAVSVLDSCHKTLSESVSAKAGDRLCIALAAELQQMQERMA 626
Query: 181 NRRIYEQSGRAYLLSGISSHSSQRAXX---XXXXXXXXXXYQTASQVDMITRSQTMLM-- 235
N+ +YEQSGRAY+LSG+SSHS+QRA YQT S VDM+TRSQT+++
Sbjct: 627 NQHVYEQSGRAYVLSGLSSHSAQRATTRGDSTDSSSLLQSYQTPSMVDMVTRSQTIVLGA 686
Query: 236 ---RTTQPGNSLP 245
R+ QP S P
Sbjct: 687 PLRRSLQPAKSFP 699
>Medtr1g094830.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr1:42650747-42655415 | 20130731
Length = 728
Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 131/238 (55%), Positives = 171/238 (71%), Gaps = 5/238 (2%)
Query: 1 MSVVVQELQIEVRCFNPCLQLSSVKAGSYQTRLINNARMACIKVGDLYAEEERDFFITMN 60
+SVV+QELQ+ + C P L L S+KAGSY +RL+ + R I VGDLYA+EERDF +++N
Sbjct: 471 LSVVIQELQVAIECIQPDLGLVSLKAGSYPSRLMADRRKGVIDVGDLYADEERDFLVSVN 530
Query: 61 VPADDSSDEMSLLIVRGLYRDPTTKEMVGLDVTSEVKIQRPDIARGVAVSIEVDKQRNRN 120
VPA SS+E SL+ V+ +Y+DP T+E L+ + EVK++RP+IAR V +S+EVD+QRNR
Sbjct: 531 VPAT-SSNETSLIKVKCVYKDPLTQETSTLE-SDEVKVERPEIARQVVMSLEVDRQRNRL 588
Query: 121 LATEVMTEARVKAERGDFVAAVSTLESCQRALSETVSARAGDSLCVSLSAELKEMQERME 180
A E M AR AE+GD AV LE+C++ LSETVSA++ D LCV+L AELKEMQERM
Sbjct: 589 QAAEAMAHARTAAEKGDLAGAVFILENCRKMLSETVSAKSHDRLCVALDAELKEMQERMA 648
Query: 181 NRRIYEQSGRAYLLSGISSHSSQRAXX---XXXXXXXXXXYQTASQVDMITRSQTMLM 235
+R +YE SGRAY+LSG+SSHS QRA YQT S V+M+TRSQ ML+
Sbjct: 649 SRHVYEASGRAYILSGLSSHSWQRATARGDSTDSSSLVQAYQTPSMVEMLTRSQAMLL 706
>Medtr1g094830.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr1:42652537-42655415 | 20130731
Length = 642
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 131/238 (55%), Positives = 171/238 (71%), Gaps = 5/238 (2%)
Query: 1 MSVVVQELQIEVRCFNPCLQLSSVKAGSYQTRLINNARMACIKVGDLYAEEERDFFITMN 60
+SVV+QELQ+ + C P L L S+KAGSY +RL+ + R I VGDLYA+EERDF +++N
Sbjct: 385 LSVVIQELQVAIECIQPDLGLVSLKAGSYPSRLMADRRKGVIDVGDLYADEERDFLVSVN 444
Query: 61 VPADDSSDEMSLLIVRGLYRDPTTKEMVGLDVTSEVKIQRPDIARGVAVSIEVDKQRNRN 120
VPA SS+E SL+ V+ +Y+DP T+E L+ + EVK++RP+IAR V +S+EVD+QRNR
Sbjct: 445 VPAT-SSNETSLIKVKCVYKDPLTQETSTLE-SDEVKVERPEIARQVVMSLEVDRQRNRL 502
Query: 121 LATEVMTEARVKAERGDFVAAVSTLESCQRALSETVSARAGDSLCVSLSAELKEMQERME 180
A E M AR AE+GD AV LE+C++ LSETVSA++ D LCV+L AELKEMQERM
Sbjct: 503 QAAEAMAHARTAAEKGDLAGAVFILENCRKMLSETVSAKSHDRLCVALDAELKEMQERMA 562
Query: 181 NRRIYEQSGRAYLLSGISSHSSQRAXX---XXXXXXXXXXYQTASQVDMITRSQTMLM 235
+R +YE SGRAY+LSG+SSHS QRA YQT S V+M+TRSQ ML+
Sbjct: 563 SRHVYEASGRAYILSGLSSHSWQRATARGDSTDSSSLVQAYQTPSMVEMLTRSQAMLL 620
>Medtr8g085360.1 | hypothetical protein | LC |
chr8:35364598-35366072 | 20130731
Length = 137
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 58/119 (48%), Gaps = 42/119 (35%)
Query: 1 MSVVVQELQIEVRCFNPCLQLSSVKAGSYQTRLINNARMACIKVGDLYAEEERDFFITMN 60
MSVVVQ+L IEV C LQ SSVK GSYQ+ L N DF
Sbjct: 60 MSVVVQDLHIEVWCARSRLQHSSVKMGSYQSTLTN------------------DF----- 96
Query: 61 VPADDSSDEMSLLIVRGLYRDPTTKEMVGLDVTSEVKIQRPDIARGVAVSIEVDKQRNR 119
Y DP TK M GLDVTSEVKI+R ++AR VS EVD+Q NR
Sbjct: 97 ------------------YNDPITK-MKGLDVTSEVKIERANVARDQGVSTEVDRQMNR 136
>Medtr3g111210.1 | zinc finger (C3HC4-type RING finger) family
protein | HC | chr3:51968411-51966024 | 20130731
Length = 766
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 98/183 (53%), Gaps = 9/183 (4%)
Query: 1 MSVVVQELQIEV--RCFNPCLQLSSVKAGSYQTRLINNARMACIKVGDLYAEEERDFFIT 58
+SVVVQ+L++++ + + +++++ + S + L++ + +++GDLYAEEER+ +
Sbjct: 518 LSVVVQDLRVQLGFQSDSARAEINAIYSCSGRPTLLS---LGAVRLGDLYAEEERELLVE 574
Query: 59 MNVPADD-SSDEMSLLIVRGLYRDPTTKEMV-GLDVTSEVKIQRPDIARGVAVSIEVDKQ 116
M VPA ++ VR LY+DP ++E+V G + V++ + + +++
Sbjct: 575 MRVPASALGYGTHHVMTVRCLYKDPASQEIVYGREQGLTVQLPQNQSQNIRSSGTRIERL 634
Query: 117 RNRNLATEVMTEA-RVKAERGDFVAAVSTLESCQRALSETVSARAGDSLCVSLSAELKEM 175
RN + T + E+ R+ DF +A L S + L ++ SA A + L AEL E+
Sbjct: 635 RNLFITTRAIAESRRLLDHNSDFTSAHHLLASARSLLIQSGSASA-EQYVRGLEAELAEL 693
Query: 176 QER 178
R
Sbjct: 694 HWR 696