Miyakogusa Predicted Gene

Lj0g3v0197339.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0197339.1 gi|27464258|gb|AF521173.1|.path1.1
         (343 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g464410.1 | C-type cytochrome biogenesis protein | HC | ch...   489   e-138

>Medtr8g464410.1 | C-type cytochrome biogenesis protein | HC |
           chr8:22761973-22757927 | 20130731
          Length = 384

 Score =  489 bits (1258), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 255/331 (77%), Positives = 273/331 (82%), Gaps = 6/331 (1%)

Query: 13  LQPCRIANCNLDRHGRHVVPINVHKKASEPENCLQSDWKSNGNNIRTFIGAMTAANLVXX 72
           LQ CR     ++ HG+ +  I   K  +E ENCL+S  K NGN+I TFIG +TAA LV  
Sbjct: 60  LQSCR----TINSHGKRI--IATKKVKTEHENCLRSKSKINGNSIMTFIGGLTAAQLVAP 113

Query: 73  XXXXXXXXXSFYDLADGSINDWFGGILYSAGQQANEAVLDQLSSLSFTSLAVIFGAGLVT 132
                      + LADG I DWFGGIL+SAGQQANEAVLDQLSSLSFTSLAVI+GAGLVT
Sbjct: 114 VTAKAEIVAPVFTLADGGIGDWFGGILFSAGQQANEAVLDQLSSLSFTSLAVIYGAGLVT 173

Query: 133 SLSPCTLSVLPLTLGYIGAFGSGKSRAEVIGDSIXXXXXXXXXXXXXXXXXXFAGKAYGQ 192
           SLSPCTLSVLPLTLGYIGAFGSGKSRA+VIGDSI                  FAGKAYGQ
Sbjct: 174 SLSPCTLSVLPLTLGYIGAFGSGKSRAQVIGDSIAFSLGLATTLALLGVGASFAGKAYGQ 233

Query: 193 IGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDSFDPRSVAANLPSSVQAYLAGLTFALA 252
           IGQGLP+AASGLAVIMGLNLLEIIELQLPSFFDSFDP+S+AAN PSSVQAYLAGLTFALA
Sbjct: 234 IGQGLPVAASGLAVIMGLNLLEIIELQLPSFFDSFDPKSLAANFPSSVQAYLAGLTFALA 293

Query: 253 ASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQSLLSFRKYS 312
           ASPCSTPVLATLLGYVAASK+PVIGGSLLLTYTTGYI+PLLLAASFAGALQSLLSFRKYS
Sbjct: 294 ASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYS 353

Query: 313 AWINPISGAMLLGGGVYTFLDKLFPATTMAM 343
           AWINPISGAMLLGGGVYTFLD+LFPA TMAM
Sbjct: 354 AWINPISGAMLLGGGVYTFLDRLFPAATMAM 384