Miyakogusa Predicted Gene

Lj0g3v0196509.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0196509.1 Non Characterized Hit- tr|I3SD11|I3SD11_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,97.83,3e-17,
,CUFF.12443.1
         (46 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g080750.1 | purine permease | HC | chr7:30745503-30743754 ...    78   2e-15
Medtr4g098900.1 | purine permease | HC | chr4:40837628-40840233 ...    51   2e-07
Medtr2g015470.1 | purine permease | HC | chr2:4584280-4582493 | ...    49   1e-06

>Medtr7g080750.1 | purine permease | HC | chr7:30745503-30743754 |
           20130731
          Length = 352

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 38/46 (82%)

Query: 1   MNGVKIISMLVAIWGLASYIYQNYIDDLKARRTQAVVSKSSNGSSC 46
           MNGVKIISML+A+WG ASYIYQNY+DDLKARR QA  SK  N S C
Sbjct: 307 MNGVKIISMLMALWGFASYIYQNYLDDLKARRAQAGTSKPHNESPC 352


>Medtr4g098900.1 | purine permease | HC | chr4:40837628-40840233 |
           20130731
          Length = 421

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 33/43 (76%)

Query: 1   MNGVKIISMLVAIWGLASYIYQNYIDDLKARRTQAVVSKSSNG 43
           +NGVK I++++AIWG  SYIYQ+Y+DD KA+  ++ + + S G
Sbjct: 317 INGVKFIALMLAIWGFLSYIYQHYLDDKKAKANESHLPQVSRG 359


>Medtr2g015470.1 | purine permease | HC | chr2:4584280-4582493 |
           20130731
          Length = 382

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 29/36 (80%)

Query: 1   MNGVKIISMLVAIWGLASYIYQNYIDDLKARRTQAV 36
           ++GVK I++++AIWG  SYIYQNY+DD KA+  + +
Sbjct: 336 IDGVKSIALIIAIWGFFSYIYQNYLDDKKAKEDKVI 371