Miyakogusa Predicted Gene

Lj0g3v0196219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0196219.1 Non Characterized Hit- tr|O23545|O23545_ARATH
Putative uncharacterized protein AT4g17010
OS=Arabidop,53.97,0.000000005,coiled-coil,NULL; seg,NULL,CUFF.12413.1
         (197 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g086600.1 | hypothetical protein | HC | chr3:39253929-3925...   195   2e-50

>Medtr3g086600.1 | hypothetical protein | HC |
           chr3:39253929-39258149 | 20130731
          Length = 163

 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/160 (63%), Positives = 121/160 (75%), Gaps = 5/160 (3%)

Query: 1   MNKFVEFGRKALFYVRVLSGYEERKIRSFXXXXXXXXXXXXXXXXXINKVPEQVMLSEVR 60
           MNK +E+GR A+FY+RVLSGYEER+IR++                 INKVPEQ++L+EVR
Sbjct: 1   MNKLLEYGRTAMFYIRVLSGYEERRIRNYRMQLEQRVREAQARKAAINKVPEQIILTEVR 60

Query: 61  RMVEEMQALNKKLEETEVAIEEYFKPLDKEAEIIMQMQLQREEKTSEMMMSALEQQALLK 120
           RMVEEMQALNKKLEETEVAIEEYFKPLDKEAEI+M MQLQ EEKTSEMMM AL++QA+ +
Sbjct: 61  RMVEEMQALNKKLEETEVAIEEYFKPLDKEAEILMTMQLQGEEKTSEMMMKALQEQAMRQ 120

Query: 121 NDEAGKTA-----DNASTNLKESEIMMKMPIGEEENTLKE 155
             E  K+A     DN  TN KESE ++K  IGEEE TLK+
Sbjct: 121 QVETEKSASMHQTDNIETNQKESESVVKTCIGEEEKTLKD 160