Miyakogusa Predicted Gene

Lj0g3v0196209.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0196209.1 Non Characterized Hit- tr|D7MHD8|D7MHD8_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,37.65,4e-18,seg,NULL,CUFF.12452.1
         (208 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g011550.1 | zein-binding protein | HC | chr4:2845042-28411...   234   3e-62
Medtr4g011540.1 | zein-binding protein | LC | chr4:2840319-28384...   220   7e-58

>Medtr4g011550.1 | zein-binding protein | HC | chr4:2845042-2841114
           | 20130731
          Length = 587

 Score =  234 bits (598), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 126/215 (58%), Positives = 162/215 (75%), Gaps = 12/215 (5%)

Query: 1   MALPEIHSWTLGGLVGAFVDLAIAYFLLCGSAFAFFAYKLCMFFGLFLPCPCKGSFGYRN 60
           MA+ EIHSW+LG ++G+++DL IAY LLCGS  AFFA+K+  FFGL LPCPCKG  GYRN
Sbjct: 1   MAIEEIHSWSLGEIIGSYIDLFIAYVLLCGSIIAFFAFKMFRFFGLVLPCPCKGILGYRN 60

Query: 61  SNFCVHKMLFEWPSRKICSIQVMAVRRFPFDVLWL-KGHSC-NANDKM----VAQKMFDN 114
           S+FC+HK+LFE P RKICSIQVMA +RFPFD++W+ KGHS  N+N+      V +K  D+
Sbjct: 61  SDFCLHKILFELPLRKICSIQVMAAKRFPFDLVWVKKGHSLDNSNENNIVVDVKEKTSDS 120

Query: 115 RLVELEDEASCSSYASPRLVSF-EKENGYDAKGKRVMSLKXXXXXXXXXXXXYDCGKISS 173
           R+VELEDE+SCS    PRL+S  ++++GYDAKGKR++SLK            YD GK+ S
Sbjct: 121 RIVELEDESSCS---GPRLLSLVDRDSGYDAKGKRILSLKRRSGTRRRKRGSYDYGKMDS 177

Query: 174 VVPSDSLQSDVAVTSCLPCDG--SIIRDRTSERIY 206
           V+  DS QSDVA +SCLPCDG  S+I+DR+S+ IY
Sbjct: 178 VIRCDSFQSDVAFSSCLPCDGSSSVIKDRSSQSIY 212


>Medtr4g011540.1 | zein-binding protein | LC | chr4:2840319-2838435
           | 20130731
          Length = 464

 Score =  220 bits (561), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 125/220 (56%), Positives = 150/220 (68%), Gaps = 15/220 (6%)

Query: 1   MALPEIHSWTLGGLVGAFVDLAIAYFLLCGSAFAFFAYKLCMFFGLFLPCPCKGSFGYRN 60
           MAL +IHSW+LGG++G+F+DL +AY LLC S   FFA KL  FFGL LPCPCKG FGYRN
Sbjct: 1   MALDKIHSWSLGGIIGSFIDLFLAYVLLCVSTITFFASKLLRFFGLHLPCPCKGIFGYRN 60

Query: 61  SNFCVHKMLFEWPSRKICSIQVMAVRRFPFDVLWL-KGHSC-NAN-DKMVA---QKMFDN 114
            N C H +LFEWP + +CSIQVMA +RFPFD++W+ KGHS  N N +KMV    +K  DN
Sbjct: 61  RNLCFHDILFEWPLKNVCSIQVMAAKRFPFDLVWVKKGHSLDNTNGNKMVVNFNEKTCDN 120

Query: 115 R--LVELEDEASCSSYASPRLVSF-EKENGYDAKGKRVMSLKXXXXXXXXXXXXYDCGKI 171
              + ELEDE SCS    PRL+S  + E+G DAKGKRVMSLK            YD GK 
Sbjct: 121 TNGIGELEDENSCS---GPRLLSLIDIESGCDAKGKRVMSLKRRSGIRRRKRGSYDYGKN 177

Query: 172 SSVVPSDSLQSD-VAVTSCLPCDGS--IIRDRTSERIYPA 208
            SV+P D+ +SD VA  SCLP DGS   I DR+S+ I PA
Sbjct: 178 DSVIPCDTFRSDVVAFCSCLPYDGSNNSIEDRSSQSIIPA 217