Miyakogusa Predicted Gene
- Lj0g3v0196179.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0196179.1 tr|B9MUV9|B9MUV9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_676458 PE=4
SV=1,46.43,1e-18,MYB_LIKE,Myb-like domain; Myb_DNA-bind_4,NULL;
seg,NULL,CUFF.12417.1
(289 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g017500.1 | Myb/SANT-like DNA-binding domain protein | HC ... 197 1e-50
Medtr4g117990.1 | transcription factor | HC | chr4:48969471-4897... 99 5e-21
Medtr7g081190.1 | Myb/SANT-like DNA-binding domain protein | HC ... 87 3e-17
Medtr1g061600.1 | aspartate/glutamate/uridylate kinase family pr... 70 2e-12
Medtr4g079960.2 | sequence-specific DNA-binding transcription fa... 58 1e-08
Medtr4g079960.3 | sequence-specific DNA-binding transcription fa... 58 1e-08
Medtr4g079960.1 | sequence-specific DNA-binding transcription fa... 58 1e-08
Medtr3g014280.1 | transcription factor | HC | chr3:4028479-40314... 58 1e-08
Medtr1g037650.1 | Myb/SANT-like DNA-binding domain protein | HC ... 57 3e-08
>Medtr5g017500.1 | Myb/SANT-like DNA-binding domain protein | HC |
chr5:6397265-6398575 | 20130731
Length = 229
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 100/119 (84%), Gaps = 7/119 (5%)
Query: 13 VKKPQPIPWTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSA 72
KKPQPIPWTHQET+NLIRAYQ+KWYSLKRGPLR +QWEEVAVVVAARCGYD+ HPSK+A
Sbjct: 14 TKKPQPIPWTHQETINLIRAYQDKWYSLKRGPLRGSQWEEVAVVVAARCGYDYNHPSKTA 73
Query: 73 LQCRHKIEKLRQRHRAEKHR-------PATRPWQYFSLMDDLERGPLPISAHPLASLPP 124
LQCRHK+EKLRQRHR+EK R ++R WQYF LMDDLERGPLPIS PL+ P
Sbjct: 74 LQCRHKMEKLRQRHRSEKRRLTATSSVASSRSWQYFRLMDDLERGPLPISVRPLSHNHP 132
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 52/58 (89%)
Query: 218 GLTEEIKAFGERFIGLENLKMEMMKETERFRFEMEKKRMRMILESQRRVVDSIGRAFG 275
GLT E+++F ER IGLEN+KMEMMKETERFR EME KR+RMILESQ R+VDSIG+AFG
Sbjct: 170 GLTAELRSFAERIIGLENMKMEMMKETERFRLEMENKRIRMILESQWRIVDSIGKAFG 227
>Medtr4g117990.1 | transcription factor | HC |
chr4:48969471-48970716 | 20130731
Length = 340
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 9/106 (8%)
Query: 18 PIPWTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRH 77
P W+ +ET+ LI +Y+EKWYSL RG L++ W+EVA V+ RC P+K+ +QCRH
Sbjct: 41 PPCWSPEETLALIDSYREKWYSLGRGNLKATHWQEVADSVSNRCPN--VTPAKTPVQCRH 98
Query: 78 KIEKLRQRHRAEKHRPATRP-------WQYFSLMDDLERGPLPISA 116
K+EKLR+R+R E R + P W +F LMD +E+GP P+ +
Sbjct: 99 KMEKLRKRYRTEIQRARSLPHSRFNSAWVHFKLMDSMEKGPSPVKS 144
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 207 GLGMS-ESGLVLGLTEEIKAFGERFIGLENLKMEMMKETERFRFEMEKKRMRMILESQRR 265
GLG E + + IK G+ F+ +E KMEM +E E R EME KR MILESQ+R
Sbjct: 248 GLGNKRERDPLTEVVSAIKLLGDGFVRMEQKKMEMAREIETMRMEMEMKRTEMILESQQR 307
Query: 266 VVDSIGRAF 274
+V++ +A
Sbjct: 308 IVEAFAKAV 316
>Medtr7g081190.1 | Myb/SANT-like DNA-binding domain protein | HC |
chr7:30965503-30963216 | 20130731
Length = 388
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 10/102 (9%)
Query: 18 PIPWTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRH 77
P WT +ET LI +Y++KWYSL R L++ W+EVA VA RC + + +K+A+QCRH
Sbjct: 43 PPCWTPEETSALIDSYRDKWYSLGRTNLKATHWQEVADAVAVRCP-NSSPVAKTAVQCRH 101
Query: 78 KIEKLRQRHRAEKHRPATRP---------WQYFSLMDDLERG 110
K+EKLR+R+R+E + + P W F MD +E+G
Sbjct: 102 KMEKLRKRYRSEIQKLRSLPVPRSRSSSSWVLFKAMDSMEKG 143
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 219 LTEEIKAFGERFIGLENLKMEMMKETERFRFEMEKKRMRMILESQRRVVDSIGRAFGXXX 278
+ IK + F+ +E +KMEM +E E R EME KR MILESQ+R+V++ +A
Sbjct: 291 MVNAIKVLRDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAISEKN 350
Query: 279 XXKRMK 284
++++
Sbjct: 351 KKRKLR 356
>Medtr1g061600.1 | aspartate/glutamate/uridylate kinase family
protein, putative | HC | chr1:26896287-26891384 |
20130731
Length = 512
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRHKIE 80
W+ V L+ AY EK+ L RG LR WEEVA +V+ RC + SKS QC++K++
Sbjct: 133 WSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVASMVSERC----ENQSKSVEQCKNKVD 188
Query: 81 KLRQRHRAEKHR-----PATRPWQYFSLMDDLERGPLP 113
L++R++ E+HR + W +F M+ + LP
Sbjct: 189 NLKKRYKLERHRMNNGCISASHWPWFKQMEHIVGNSLP 226
>Medtr4g079960.2 | sequence-specific DNA-binding transcription
factors protein, putative | HC | chr4:30958270-30954949
| 20130731
Length = 304
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRHKIE 80
WT T LI A+ E++ L RG LR W+EVA V ++ +QC+++I+
Sbjct: 31 WTEDATSTLIDAWGERYLDLNRGNLRQKTWQEVADAVNDFHAAGNRKARRTDVQCKNRID 90
Query: 81 KLRQRHRAEKHRPA------TRPWQYFSLMDDLERGPLPI 114
L+++++ EK R + PW +F+ +D L P+
Sbjct: 91 TLKKKYKIEKARVSESDGGYQSPWPFFTRLDVLIGDTFPV 130
>Medtr4g079960.3 | sequence-specific DNA-binding transcription
factors protein, putative | HC | chr4:30958242-30955342
| 20130731
Length = 315
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRHKIE 80
WT T LI A+ E++ L RG LR W+EVA V ++ +QC+++I+
Sbjct: 31 WTEDATSTLIDAWGERYLDLNRGNLRQKTWQEVADAVNDFHAAGNRKARRTDVQCKNRID 90
Query: 81 KLRQRHRAEKHRPA------TRPWQYFSLMDDLERGPLPI 114
L+++++ EK R + PW +F+ +D L P+
Sbjct: 91 TLKKKYKIEKARVSESDGGYQSPWPFFTRLDVLIGDTFPV 130
>Medtr4g079960.1 | sequence-specific DNA-binding transcription
factors protein, putative | HC | chr4:30958199-30957118
| 20130731
Length = 313
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRHKIE 80
WT T LI A+ E++ L RG LR W+EVA V ++ +QC+++I+
Sbjct: 31 WTEDATSTLIDAWGERYLDLNRGNLRQKTWQEVADAVNDFHAAGNRKARRTDVQCKNRID 90
Query: 81 KLRQRHRAEKHRPA------TRPWQYFSLMDDLERGPLPI 114
L+++++ EK R + PW +F+ +D L P+
Sbjct: 91 TLKKKYKIEKARVSESDGGYQSPWPFFTRLDVLIGDTFPV 130
>Medtr3g014280.1 | transcription factor | HC | chr3:4028479-4031484
| 20130731
Length = 325
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRHKIE 80
W+ L+ AY+ KW R L+ WE+VA V++R + K+ QC++KIE
Sbjct: 38 WSEGAVTTLLEAYESKWVLRNRAKLKGQDWEDVAKHVSSRS--NSTKSPKTQTQCKNKIE 95
Query: 81 KLRQRHRAEKHRPATRPWQYFSLMDDLERGPLPISAHPL 119
+++R+R+E W +S +D L RG +S L
Sbjct: 96 SMKKRYRSESASSDVSSWPLYSRLDLLLRGTGQLSTTTL 134
>Medtr1g037650.1 | Myb/SANT-like DNA-binding domain protein | HC |
chr1:13960642-13959736 | 20130731
Length = 189
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRHKIE 80
W+ L+ AY+ KW R L+ WE+VA V++R + K+ QC++KIE
Sbjct: 38 WSEGAVTTLLEAYESKWVLRNRAKLKGQDWEDVAKHVSSRS--NSTKSPKTQTQCKNKIE 95
Query: 81 KLRQRHRAEKHRPATRPWQYFSLMDDLERGPLPISAHPL 119
+++R+R+E W +S +D L RG +S L
Sbjct: 96 SMKKRYRSESASSDVSSWPLYSRLDLLLRGTGQLSTTTL 134