Miyakogusa Predicted Gene

Lj0g3v0195339.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0195339.1 Non Characterized Hit- tr|B9RMP7|B9RMP7_RICCO
Two-component sensor histidine kinase bacteria,
putati,31.3,5e-19,seg,NULL; no
description,Homeodomain-like,CUFF.12360.1
         (229 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g086100.2 | two-component response regulator ARR2-like pro...   186   2e-47
Medtr3g086100.1 | two-component response regulator ARR2-like pro...   185   3e-47
Medtr8g079940.1 | two-component response regulator ARR2-like pro...   113   1e-25

>Medtr3g086100.2 | two-component response regulator ARR2-like
           protein | HC | chr3:38954988-38950711 | 20130731
          Length = 499

 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 127/212 (59%), Gaps = 29/212 (13%)

Query: 41  SFDCAIPTQYSWTEVPRMQLK-EQKSIVQLEDSFNQLPPLLGKXXXXXXXXXXXXXX--- 96
           +FDC + T YSWTE+P+ QLK EQKS+V LED FN LP L GK                 
Sbjct: 294 AFDCNMSTPYSWTEIPKTQLKKEQKSVVHLEDKFNLLP-LNGKQHNIQVDQSQSIASISS 352

Query: 97  --XXTEEEVPACIETNPLFSDYNSSYTS----------------GSLMMSDQPLQPTSAA 138
               TE++V AC+ET P FSDY   YTS                GSLMM+DQP QP S  
Sbjct: 353 TPSITEQDVAACVETKPTFSDYKKDYTSSVSSIRSSVDTFPFQPGSLMMNDQPTQPISTT 412

Query: 139 NLGLKTLGSNLSSISHLEFFQRNLLLGADTPSASSEEDLYSYRIQGECYDMNFCLQSIEM 198
           N GLKT  SNLS IS LE +QRNLLLG +  SA  +EDLY Y      ++MNF  Q+I M
Sbjct: 413 NFGLKTQTSNLSCISDLESYQRNLLLGGEAASAPLDEDLYFY-----WHNMNFGQQNIGM 467

Query: 199 PEFYDPGLITEFPPH-YDSTDYSVMDQGLLIA 229
            E+YDPGL+ E P H YDS DYSV+DQGL IA
Sbjct: 468 SEYYDPGLLIEVPNHLYDSADYSVIDQGLFIA 499



 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 33/37 (89%)

Query: 1   MNVPWLTREKIASHLQKYRLSLSRLQKDDEQNSSSKG 37
           MNVPWL+RE +ASHLQKYRL LSRLQKD+EQ SSS G
Sbjct: 162 MNVPWLSRENVASHLQKYRLYLSRLQKDNEQKSSSSG 198


>Medtr3g086100.1 | two-component response regulator ARR2-like
           protein | HC | chr3:38954988-38950711 | 20130731
          Length = 570

 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 127/212 (59%), Gaps = 29/212 (13%)

Query: 41  SFDCAIPTQYSWTEVPRMQLK-EQKSIVQLEDSFNQLPPLLGKXXXXXXXXXXXXXX--- 96
           +FDC + T YSWTE+P+ QLK EQKS+V LED FN LP L GK                 
Sbjct: 365 AFDCNMSTPYSWTEIPKTQLKKEQKSVVHLEDKFNLLP-LNGKQHNIQVDQSQSIASISS 423

Query: 97  --XXTEEEVPACIETNPLFSDYNSSYTS----------------GSLMMSDQPLQPTSAA 138
               TE++V AC+ET P FSDY   YTS                GSLMM+DQP QP S  
Sbjct: 424 TPSITEQDVAACVETKPTFSDYKKDYTSSVSSIRSSVDTFPFQPGSLMMNDQPTQPISTT 483

Query: 139 NLGLKTLGSNLSSISHLEFFQRNLLLGADTPSASSEEDLYSYRIQGECYDMNFCLQSIEM 198
           N GLKT  SNLS IS LE +QRNLLLG +  SA  +EDLY Y      ++MNF  Q+I M
Sbjct: 484 NFGLKTQTSNLSCISDLESYQRNLLLGGEAASAPLDEDLYFY-----WHNMNFGQQNIGM 538

Query: 199 PEFYDPGLITEFPPH-YDSTDYSVMDQGLLIA 229
            E+YDPGL+ E P H YDS DYSV+DQGL IA
Sbjct: 539 SEYYDPGLLIEVPNHLYDSADYSVIDQGLFIA 570



 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 33/37 (89%)

Query: 1   MNVPWLTREKIASHLQKYRLSLSRLQKDDEQNSSSKG 37
           MNVPWL+RE +ASHLQKYRL LSRLQKD+EQ SSS G
Sbjct: 233 MNVPWLSRENVASHLQKYRLYLSRLQKDNEQKSSSSG 269


>Medtr8g079940.1 | two-component response regulator ARR2-like
           protein | HC | chr8:34314993-34318731 | 20130731
          Length = 538

 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/198 (38%), Positives = 106/198 (53%), Gaps = 22/198 (11%)

Query: 31  QNSSSKGSLTSFDCAIPTQYSWTEVPRMQLKEQ-KSIVQLEDSFNQLPPLLGKXXXXXXX 89
           +++ S+ + T FD  IPTQYSW EVP+  L E+  ++VQL+D+ + LP            
Sbjct: 355 ESAESEANHTVFDSVIPTQYSWNEVPKRPLGEELNTLVQLKDNLSHLP------------ 402

Query: 90  XXXXXXXXXTEEEVPACIETNP--LFSDY----NSSYTSGSLMMSDQPLQPTSAANLGLK 143
                     + +    I +NP    SDY    NS+ +S     S         +NL LK
Sbjct: 403 --LNVTQQHFQNDRSLSINSNPSGYKSDYIRPVNSTVSSVDTFPSQSKSDIIFTSNLSLK 460

Query: 144 TLGSNLSSISHLEFFQRNLLLGADTPSASSEEDLYSYRIQGECYDMNFCLQSIEMPEFYD 203
           T   NL   S +E +QRNLLLG ++ S   +EDL  + +QGE YDMNF +Q+IEM E+YD
Sbjct: 461 TPKFNLGCASDMEIYQRNLLLGIESASTPLDEDLNLFLLQGEYYDMNFDMQNIEMSEYYD 520

Query: 204 PGLITEFPPH-YDSTDYS 220
           P LI E P + Y S DYS
Sbjct: 521 PRLIPEVPTNLYASGDYS 538



 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 32/37 (86%)

Query: 1   MNVPWLTREKIASHLQKYRLSLSRLQKDDEQNSSSKG 37
           MNVPWLTRE +ASHLQKYRL LSRLQK ++Q SSS G
Sbjct: 243 MNVPWLTRENVASHLQKYRLYLSRLQKKNDQKSSSGG 279