Miyakogusa Predicted Gene
- Lj0g3v0195299.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0195299.1 Non Characterized Hit- tr|G7KBS3|G7KBS3_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,38.12,2e-16,ARID-like,ARID/BRIGHT DNA-binding domain;
HMG-box,High mobility group, superfamily;
ARID,ARID/BRIGHT,gene.g15127.t1.1
(288 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g080030.1 | ARID/bright DNA-binding domain protein | LC | ... 178 4e-45
Medtr5g095070.1 | ARID/bright DNA-binding domain protein | HC | ... 177 1e-44
Medtr1g084150.1 | HMG (high mobility group) box protein | HC | c... 69 7e-12
Medtr3g114920.1 | high mobility group B-like protein | HC | chr3... 60 2e-09
Medtr3g009890.1 | ARID/bright DNA-binding domain protein | HC | ... 59 8e-09
Medtr7g005970.1 | high mobility group B-like protein | LC | chr7... 55 7e-08
Medtr1g116180.2 | transcription factor | HC | chr1:52519467-5251... 54 1e-07
Medtr1g116180.1 | transcription factor | HC | chr1:52519486-5251... 54 2e-07
>Medtr5g080030.1 | ARID/bright DNA-binding domain protein | LC |
chr5:34254593-34257678 | 20130731
Length = 412
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/212 (49%), Positives = 127/212 (59%), Gaps = 44/212 (20%)
Query: 18 SECFYKNLTALLESSGLSLILN------DLYLFYLEVTKRGGYHQVDQEKKWGEVVSALK 71
+E FY+ L LL+ SG +LI + DLYLFYLEVTKRGGYHQVDQEKKWGEVVSALK
Sbjct: 43 TESFYRKLKELLDPSGFNLIYDVRKTSLDLYLFYLEVTKRGGYHQVDQEKKWGEVVSALK 102
Query: 72 LEGSNAKLSAQVEMLYANLLYEFEQLYFYRCPTKQAST---------------------- 109
LEG+NA L Q+E LY LLY+FE LYFYR P ++T
Sbjct: 103 LEGNNATLCDQLEKLYKELLYKFETLYFYRSPATGSNTGPVERNQNSTTSLSQLMDDQDY 162
Query: 110 -KAEG------------GYVE-PVLQPAPSNDKGRKKRGGAPTGRRTAYQIFVKQECARL 155
KA GY E V+Q APS +K +KKR GAP G ++ Y IF+KQECARL
Sbjct: 163 LKARKISEHYSSQITGIGYQEFQVVQQAPSKNKEKKKRRGAPIG-QSGYNIFLKQECARL 221
Query: 156 RACSEDSLDRTRFLRMAIDTWKNMSEIEKQPY 187
+A D R + + MAID W +S+ EK+PY
Sbjct: 222 KANHPDVGGR-KIIDMAIDAWNKLSDNEKRPY 252
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 90/181 (49%), Gaps = 22/181 (12%)
Query: 103 PTKQASTKAEGGYVEPVLQPAPSNDKGRKKRGGAPTGRRTAYQIFVKQECARLRACSEDS 162
P ++AS K ++ ++ AP+N+K +KK G P G+++AYQIF+K ECARL+A +
Sbjct: 251 PYEEASMK-----IKEEVKEAPTNNKEKKKHRGVPRGQKSAYQIFLKHECARLKADHQFQ 305
Query: 163 LDRTRFLRMAIDTWKNMSEIEKQPYMXXXXXXXXXXXXXXXXXXXXAQDMKQVNKPTSQC 222
DR AID WK MS +EK PY +D+ + + C
Sbjct: 306 GDRK---LKAIDAWKMMSPLEKLPY--EEESMKIKEEIKAAMIQKSTEDLNRDEERPIVC 360
Query: 223 GD-YSVPSQPETDNSI-VSAELGLALKMTWE-VMTGKAPEESLQEWDTYFSELDLPTGES 279
GD YSV SQP +++S +A + L K++ + G + L LD P+GE
Sbjct: 361 GDYYSVTSQPLSNDSFGNNAAVDLTEKVSEDPFFPGDLNDHHL---------LDFPSGEP 411
Query: 280 K 280
K
Sbjct: 412 K 412
>Medtr5g095070.1 | ARID/bright DNA-binding domain protein | HC |
chr5:41551282-41553797 | 20130731
Length = 271
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/245 (44%), Positives = 133/245 (54%), Gaps = 39/245 (15%)
Query: 16 HDSECFYKNLTALLESSGLSLILN----DLYLFYLEVTKRGGYHQVDQEKKWGEVVSALK 71
+D E FY LT LL+ G + DLYLFYLEVT+RGGYHQV QEKKW EVVSALK
Sbjct: 31 NDLETFYIKLTRLLDFVGKRFNVRETSLDLYLFYLEVTRRGGYHQVGQEKKWSEVVSALK 90
Query: 72 LEGSNAKLSAQVEMLYANLLYEFEQLYFYRCPTKQAST---------------------- 109
LEG+NA L AQVE LY LLYEFE+LYFYR P +T
Sbjct: 91 LEGNNATLCAQVENLYGYLLYEFEKLYFYRSPATGTTTGPGKRKRNSCPSLSQLTDDEDY 150
Query: 110 -------KAEGGYVEPVLQPAPSNDKGRKKRGGAPTGRRTAYQIFVKQECARLRACSEDS 162
K + V Q APS++K +KK+ GAP + + YQIF+K+ECARL+A D
Sbjct: 151 PMAAKISKDYSSQITEVFQQAPSSNKEKKKQKGAPRNQ-SGYQIFLKKECARLKADHRDI 209
Query: 163 LDRTRFLRMAIDTWKNMSEIEKQPYMXXXXXXXXXXXXXX--XXXXXXAQDMKQVNKPTS 220
R + MAID WK MS+I+K+PY+ QD+K+ K +
Sbjct: 210 GVRKQ---MAIDAWKKMSDIDKKPYVEESKKIKEKNKEAMIIDIKQKSTQDLKRDEKRPN 266
Query: 221 QCGDY 225
CGDY
Sbjct: 267 VCGDY 271
>Medtr1g084150.1 | HMG (high mobility group) box protein | HC |
chr1:37557535-37558637 | 20130731
Length = 233
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 97/213 (45%), Gaps = 54/213 (25%)
Query: 110 KAEGGYVEP-VLQPAPSNDKGRKK-------RGGAPTGRRTAYQIFVKQECARLRACSED 161
KA G EP VL APSNDK +KK R G PTG+ + YQIF+K ECARL+A D
Sbjct: 33 KAGAGCQEPRVLLQAPSNDKEKKKQDKEKKKRRGPPTGQ-SGYQIFLKHECARLKAHDPD 91
Query: 162 SLDRTRFLRMAIDTWKNMSEIEKQPYMXXXXXXXXXXXXX--XXXXXXXAQDMKQVNK-- 217
+D + LRMA+D W+ MS +K+PY+ +D+K+ +
Sbjct: 92 -IDGKKVLRMAVDAWQKMSATDKEPYVEESRKIKEKQKEAMITDNKQKSTEDLKKDEQKS 150
Query: 218 -----------------------PTSQCGDYSVPSQPETDNSIV-SAELGLALKMTWEVM 253
P DY V SQP + S V +A + LA KMT
Sbjct: 151 TEVLKKDEKKSTQGLNLKKDDKMPGVDGDDYGVTSQPLPNYSFVNNAAVELAFKMT---- 206
Query: 254 TGKAPEESLQ------EWDTYFSELDLPTGESK 280
E+SL+ + DTY S L++ G+SK
Sbjct: 207 -----EKSLKDPFFPVDLDTYCS-LNMLNGKSK 233
>Medtr3g114920.1 | high mobility group B-like protein | HC |
chr3:53678262-53676021 | 20130731
Length = 327
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 40 DLYLFYLEVTKRGGYHQVDQEKKWGEVVSALKLEGSNAKLSAQVEMLYANLLYEFEQLYF 99
DL++ Y+EVT+R GY +V EKKW EV S + + S + Y NLLY +EQ++F
Sbjct: 63 DLHVLYVEVTRRSGYEKVVAEKKWREVGSVFRFSSTTTSASFVLRKHYLNLLYHYEQVHF 122
Query: 100 YRCPTKQASTKAEGGYVEPVLQPAPSNDKG 129
+ K +G PV P+P G
Sbjct: 123 F---------KVQG----PVYTPSPDAFSG 139
>Medtr3g009890.1 | ARID/bright DNA-binding domain protein | HC |
chr3:2204856-2199429 | 20130731
Length = 274
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 12 SDKTHDSECFYKNLTALLESSGLSLILN-------DLYLFYLEVTKRGGYHQVDQEKKWG 64
SD DS F + L + +S G L + DL+ ++EVT RGG +V ++KW
Sbjct: 37 SDLVRDSNLFQQKLQSFHDSLGTKLKIPTIGGKPLDLHHLFVEVTSRGGIEKVIVDRKWK 96
Query: 65 EVVSALKLEGSNAKLSAQVEMLYANLLYEFEQLYFY 100
EV+ + + S V Y +LLY FEQ Y++
Sbjct: 97 EVIMSFNFRDTITSGSFMVRKTYLSLLYHFEQAYYF 132
>Medtr7g005970.1 | high mobility group B-like protein | LC |
chr7:435478-439265 | 20130731
Length = 437
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 40 DLYLFYLEVTKRGGYHQVDQEKKWGEVVSALKLEGSNAKLSAQVEMLYANLLYEFEQLYF 99
DL ++EVT RGG ++ +E++W EV +A + S + Y++LLY +EQ+Y+
Sbjct: 68 DLCRLFIEVTSRGGIEKLMKERRWKEVTAAFSFPSTATNASFVLRKYYSSLLYHYEQIYY 127
Query: 100 YRC---------PTKQASTKAEGGYVEPVLQPAP 124
+R + ST + + LQP+P
Sbjct: 128 FRSKRWTPASSDALQNQSTMSVPASITQFLQPSP 161
>Medtr1g116180.2 | transcription factor | HC |
chr1:52519467-52514170 | 20130731
Length = 333
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 40 DLYLFYLEVTKRGGYHQVDQEKKWGEVVSALKLEGSNAKLSAQVEMLYANLLYEFEQLYF 99
DL+ ++EVT RGG+ ++ +++KW EV + S + Y +LLY +EQ+Y+
Sbjct: 67 DLHRLFVEVTSRGGFEKIIKDRKWKEVTLVFNFPSTATNASFVLRKYYTSLLYHYEQIYY 126
Query: 100 YRC 102
++
Sbjct: 127 FKA 129
>Medtr1g116180.1 | transcription factor | HC |
chr1:52519486-52514092 | 20130731
Length = 415
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 40 DLYLFYLEVTKRGGYHQVDQEKKWGEVVSALKLEGSNAKLSAQVEMLYANLLYEFEQLYF 99
DL+ ++EVT RGG+ ++ +++KW EV + S + Y +LLY +EQ+Y+
Sbjct: 67 DLHRLFVEVTSRGGFEKIIKDRKWKEVTLVFNFPSTATNASFVLRKYYTSLLYHYEQIYY 126
Query: 100 YRC 102
++
Sbjct: 127 FKA 129