Miyakogusa Predicted Gene

Lj0g3v0195229.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0195229.2 Non Characterized Hit- tr|D7UA24|D7UA24_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,86.33,0,PEPTIDE
CHAIN RELEASE FACTOR 2,Peptide chain release factor 2; PEPTIDE CHAIN
RELEASE FACTOR,NULL; co,CUFF.12338.2
         (139 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g112100.1 | peptide chain release factor 2 | HC | chr7:460...   200   3e-52
Medtr7g080430.1 | peptide chain release factor 2 | HC | chr7:305...    54   4e-08

>Medtr7g112100.1 | peptide chain release factor 2 | HC |
           chr7:46081007-46085393 | 20130731
          Length = 475

 Score =  200 bits (509), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/139 (71%), Positives = 107/139 (76%)

Query: 1   MLSAQLNKPDLWDDPVHAGKISREHGSLLGKMKEVNALERELLEHIEMIKLARDENDXXX 60
           MLSAQLNK DLWDDPV AGKI+REHGSLLGKMKEVN LERELL+ IEMIKLAR+END   
Sbjct: 137 MLSAQLNKEDLWDDPVRAGKINREHGSLLGKMKEVNGLERELLDDIEMIKLAREENDSEL 196

Query: 61  XXXXXXXXXDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWAAMVMQMYKSW 120
                    +MR N            E DS SCYIEVQ GAGGTESMDWA+M+MQMYKSW
Sbjct: 197 ELESMKALLNMRVNAKEKELEALLADEQDSRSCYIEVQAGAGGTESMDWASMIMQMYKSW 256

Query: 121 AQRRGYKVTVVDEMPGEIA 139
           AQRRGYKVTV++EMPGEIA
Sbjct: 257 AQRRGYKVTVMEEMPGEIA 275


>Medtr7g080430.1 | peptide chain release factor 2 | HC |
           chr7:30593686-30589146 | 20130731
          Length = 475

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 2/131 (1%)

Query: 11  LWDDPVHAGKISREHGSLLGKMKEVNALEREL--LEHIEMIKLARDENDXXXXXXXXXXX 68
            WDD   A +       +  K+K +N  + ++   E I M+    +  D           
Sbjct: 142 FWDDRAKAQQTLSTLADVKEKIKLLNDYKTQVEDAETIVMLTEEMESVDKGLYEEASSLI 201

Query: 69  XDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWAAMVMQMYKSWAQRRGYKV 128
            ++ ++           G +D     I +  GAGGT++ DWA M+++MY  W +++ YK 
Sbjct: 202 KELNKSIDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKT 261

Query: 129 TVVDEMPGEIA 139
            VV++  GE A
Sbjct: 262 RVVEKSLGEEA 272