Miyakogusa Predicted Gene

Lj0g3v0194129.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0194129.1 tr|B9NC71|B9NC71_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_679475 PE=4
SV=1,72.88,0.000000000000002,seg,NULL,CUFF.12273.1
         (450 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g013930.1 | mediator of RNA polymerase II transcription su...   439   e-123
Medtr5g013930.2 | mediator of RNA polymerase II transcription su...   439   e-123
Medtr5g013930.4 | mediator of RNA polymerase II transcription su...   439   e-123
Medtr5g013930.3 | mediator of RNA polymerase II transcription su...   293   2e-79

>Medtr5g013930.1 | mediator of RNA polymerase II transcription
           subunit 8, putative | HC | chr5:4594167-4599658 |
           20130731
          Length = 544

 Score =  439 bits (1130), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/282 (80%), Positives = 245/282 (86%), Gaps = 5/282 (1%)

Query: 31  KTRAIGLFKAISRILEDFDAYARTNTTPKWQDILGQYSMLNLELFNIVDEIKKVSKAFLV 90
           KTRAI LFKAISRILEDFDAY RTNT PKWQDILGQYSM+NLELFNIVD+IKKVSKAF+V
Sbjct: 31  KTRAISLFKAISRILEDFDAYGRTNTNPKWQDILGQYSMVNLELFNIVDDIKKVSKAFIV 90

Query: 91  YPKNVNAQNATILPVMLSSKLLPEIEIDDASKRDQLLHSMQNLPIPTQIDKLKARIDMIA 150
           YPKNVNA+NATILPVMLS+KLLPE+E +D  KRDQLL  MQNLPI TQIDKLKARIDMIA
Sbjct: 91  YPKNVNAENATILPVMLSTKLLPEMETEDTLKRDQLLQGMQNLPIATQIDKLKARIDMIA 150

Query: 151 AACEGAEKVLADTRKAYCFGTRQGPSSIAPTTLDKGQAAKIQEKENLLRSAVNVGEGLRI 210
           AACEGAEKVLADTRKAYCFGTRQGP +IAP TLDKGQAAKIQE+ENLLR+AVNVGEGLRI
Sbjct: 151 AACEGAEKVLADTRKAYCFGTRQGP-AIAP-TLDKGQAAKIQEQENLLRAAVNVGEGLRI 208

Query: 211 PGDQRQITPALPMHLADALTVNES--SFPDGSTNSVYIKNTPLPSNTMXXXXXXXXXXXX 268
           PGDQR IT +LPMHLADA TVNES  SFPDGS+N+VY+KNTPL SN+M            
Sbjct: 209 PGDQRHITASLPMHLADAFTVNESAQSFPDGSSNNVYMKNTPLSSNSMGGQNSLLQTSGS 268

Query: 269 XXXXRSAASPSAAMNTTSFDNNATASPLPYANSPRSSTNMMN 310
               RSAASPSAA + TSFD N TASP+PYANSPRS+TNMMN
Sbjct: 269 QLLGRSAASPSAATSATSFD-NTTASPIPYANSPRSTTNMMN 309



 Score =  106 bits (264), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 55/59 (93%)

Query: 392 ASGHVQHGIGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQMIPNMSATIPSQSL 450
           +S H+QH IGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQMIPN+SA I SQSL
Sbjct: 390 SSAHMQHSIGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQMIPNISAGITSQSL 448


>Medtr5g013930.2 | mediator of RNA polymerase II transcription
           subunit 8, putative | HC | chr5:4594167-4599658 |
           20130731
          Length = 436

 Score =  439 bits (1128), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/282 (80%), Positives = 245/282 (86%), Gaps = 5/282 (1%)

Query: 31  KTRAIGLFKAISRILEDFDAYARTNTTPKWQDILGQYSMLNLELFNIVDEIKKVSKAFLV 90
           KTRAI LFKAISRILEDFDAY RTNT PKWQDILGQYSM+NLELFNIVD+IKKVSKAF+V
Sbjct: 31  KTRAISLFKAISRILEDFDAYGRTNTNPKWQDILGQYSMVNLELFNIVDDIKKVSKAFIV 90

Query: 91  YPKNVNAQNATILPVMLSSKLLPEIEIDDASKRDQLLHSMQNLPIPTQIDKLKARIDMIA 150
           YPKNVNA+NATILPVMLS+KLLPE+E +D  KRDQLL  MQNLPI TQIDKLKARIDMIA
Sbjct: 91  YPKNVNAENATILPVMLSTKLLPEMETEDTLKRDQLLQGMQNLPIATQIDKLKARIDMIA 150

Query: 151 AACEGAEKVLADTRKAYCFGTRQGPSSIAPTTLDKGQAAKIQEKENLLRSAVNVGEGLRI 210
           AACEGAEKVLADTRKAYCFGTRQGP +IAP TLDKGQAAKIQE+ENLLR+AVNVGEGLRI
Sbjct: 151 AACEGAEKVLADTRKAYCFGTRQGP-AIAP-TLDKGQAAKIQEQENLLRAAVNVGEGLRI 208

Query: 211 PGDQRQITPALPMHLADALTVNES--SFPDGSTNSVYIKNTPLPSNTMXXXXXXXXXXXX 268
           PGDQR IT +LPMHLADA TVNES  SFPDGS+N+VY+KNTPL SN+M            
Sbjct: 209 PGDQRHITASLPMHLADAFTVNESAQSFPDGSSNNVYMKNTPLSSNSMGGQNSLLQTSGS 268

Query: 269 XXXXRSAASPSAAMNTTSFDNNATASPLPYANSPRSSTNMMN 310
               RSAASPSAA + TSFD N TASP+PYANSPRS+TNMMN
Sbjct: 269 QLLGRSAASPSAATSATSFD-NTTASPIPYANSPRSTTNMMN 309



 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 45/47 (95%)

Query: 392 ASGHVQHGIGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQMI 438
           +S H+QH IGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQM+
Sbjct: 390 SSAHMQHSIGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQMV 436


>Medtr5g013930.4 | mediator of RNA polymerase II transcription
           subunit 8, putative | HC | chr5:4594167-4599658 |
           20130731
          Length = 436

 Score =  439 bits (1128), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/282 (80%), Positives = 245/282 (86%), Gaps = 5/282 (1%)

Query: 31  KTRAIGLFKAISRILEDFDAYARTNTTPKWQDILGQYSMLNLELFNIVDEIKKVSKAFLV 90
           KTRAI LFKAISRILEDFDAY RTNT PKWQDILGQYSM+NLELFNIVD+IKKVSKAF+V
Sbjct: 31  KTRAISLFKAISRILEDFDAYGRTNTNPKWQDILGQYSMVNLELFNIVDDIKKVSKAFIV 90

Query: 91  YPKNVNAQNATILPVMLSSKLLPEIEIDDASKRDQLLHSMQNLPIPTQIDKLKARIDMIA 150
           YPKNVNA+NATILPVMLS+KLLPE+E +D  KRDQLL  MQNLPI TQIDKLKARIDMIA
Sbjct: 91  YPKNVNAENATILPVMLSTKLLPEMETEDTLKRDQLLQGMQNLPIATQIDKLKARIDMIA 150

Query: 151 AACEGAEKVLADTRKAYCFGTRQGPSSIAPTTLDKGQAAKIQEKENLLRSAVNVGEGLRI 210
           AACEGAEKVLADTRKAYCFGTRQGP +IAP TLDKGQAAKIQE+ENLLR+AVNVGEGLRI
Sbjct: 151 AACEGAEKVLADTRKAYCFGTRQGP-AIAP-TLDKGQAAKIQEQENLLRAAVNVGEGLRI 208

Query: 211 PGDQRQITPALPMHLADALTVNES--SFPDGSTNSVYIKNTPLPSNTMXXXXXXXXXXXX 268
           PGDQR IT +LPMHLADA TVNES  SFPDGS+N+VY+KNTPL SN+M            
Sbjct: 209 PGDQRHITASLPMHLADAFTVNESAQSFPDGSSNNVYMKNTPLSSNSMGGQNSLLQTSGS 268

Query: 269 XXXXRSAASPSAAMNTTSFDNNATASPLPYANSPRSSTNMMN 310
               RSAASPSAA + TSFD N TASP+PYANSPRS+TNMMN
Sbjct: 269 QLLGRSAASPSAATSATSFD-NTTASPIPYANSPRSTTNMMN 309



 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 45/47 (95%)

Query: 392 ASGHVQHGIGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQMI 438
           +S H+QH IGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQM+
Sbjct: 390 SSAHMQHSIGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQMV 436


>Medtr5g013930.3 | mediator of RNA polymerase II transcription
           subunit 8, putative | HC | chr5:4594167-4599648 |
           20130731
          Length = 439

 Score =  293 bits (750), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 159/207 (76%), Positives = 173/207 (83%), Gaps = 5/207 (2%)

Query: 106 MLSSKLLPEIEIDDASKRDQLLHSMQNLPIPTQIDKLKARIDMIAAACEGAEKVLADTRK 165
           MLS+KLLPE+E +D  KRDQLL  MQNLPI TQIDKLKARIDMIAAACEGAEKVLADTRK
Sbjct: 1   MLSTKLLPEMETEDTLKRDQLLQGMQNLPIATQIDKLKARIDMIAAACEGAEKVLADTRK 60

Query: 166 AYCFGTRQGPSSIAPTTLDKGQAAKIQEKENLLRSAVNVGEGLRIPGDQRQITPALPMHL 225
           AYCFGTRQGP +IAP TLDKGQAAKIQE+ENLLR+AVNVGEGLRIPGDQR IT +LPMHL
Sbjct: 61  AYCFGTRQGP-AIAP-TLDKGQAAKIQEQENLLRAAVNVGEGLRIPGDQRHITASLPMHL 118

Query: 226 ADALTVNES--SFPDGSTNSVYIKNTPLPSNTMXXXXXXXXXXXXXXXXRSAASPSAAMN 283
           ADA TVNES  SFPDGS+N+VY+KNTPL SN+M                RSAASPSAA +
Sbjct: 119 ADAFTVNESAQSFPDGSSNNVYMKNTPLSSNSMGGQNSLLQTSGSQLLGRSAASPSAATS 178

Query: 284 TTSFDNNATASPLPYANSPRSSTNMMN 310
            TSFD N TASP+PYANSPRS+TNMMN
Sbjct: 179 ATSFD-NTTASPIPYANSPRSTTNMMN 204



 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 55/59 (93%)

Query: 392 ASGHVQHGIGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQMIPNMSATIPSQSL 450
           +S H+QH IGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQMIPN+SA I SQSL
Sbjct: 285 SSAHMQHSIGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQMIPNISAGITSQSL 343