Miyakogusa Predicted Gene

Lj0g3v0193039.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0193039.1 tr|Q2QPA8|Q2QPA8_ORYSJ HAT family dimerisation
domain containing protein OS=Oryza sativa subsp.
japo,56.63,2e-19,Ribonuclease H-like,Ribonuclease H-like domain;
Dimer_Tnp_hAT,HAT dimerisation; HAT DIMERISATION DOM,CUFF.12214.1
         (151 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g055005.1 | hypothetical protein | LC | chr1:24193861-2419...    65   3e-11

>Medtr1g055005.1 | hypothetical protein | LC |
           chr1:24193861-24193136 | 20130731
          Length = 194

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 54  LEQIHTKKRNKLEHKRLEDLVFVKYNQALVRRYNIRDELDPISLD--DIDKSNEWLVGTM 111
           L +IH+KKRN+LEH+ L+ L+FVKYNQ L       + +DP+ +D  +I+  + WL+G  
Sbjct: 44  LIKIHSKKRNRLEHEMLQKLIFVKYNQTLKENCESDEYIDPVLMDYPEINAGSLWLLGDE 103

Query: 112 DEDGNDAENDRVFPNDDLTWDVVYQASGIGEPTINTR 148
               +D  +     +DDL W  V +ASG+ EP  NTR
Sbjct: 104 VRVRDDQIDVVFDDDDDLNWLDVEEASGVVEPLFNTR 140