Miyakogusa Predicted Gene

Lj0g3v0190999.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0190999.1 Non Characterized Hit- tr|A2YT86|A2YT86_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,41.51,3e-19,DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE
(RNA POLYMERASE III SUBUNIT 5),NULL; Sin_N,DNA-d,CUFF.12106.1
         (169 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g019810.1 | DNA-directed RNA polymerase III subunit RPC5-l...   157   5e-39
Medtr5g026040.1 | DNA-directed RNA polymerase III subunit RPC5-l...   156   9e-39

>Medtr5g019810.1 | DNA-directed RNA polymerase III subunit RPC5-like
           protein | HC | chr5:7511377-7522292 | 20130731
          Length = 683

 Score =  157 bits (397), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 73/113 (64%), Positives = 92/113 (81%), Gaps = 3/113 (2%)

Query: 57  EDDPMDEDTVEDQIVREIDVFFTPSLDENTELYVLQYPLRPSWRPYEFEERCKEVRLKPI 116
           E +PMDE   ED +VREIDV+F+PS+D +T+LYV+QYPLRPSWRPY+ +E+C+EVRLKP 
Sbjct: 98  EVNPMDE---EDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPG 154

Query: 117 SSRVEIDLSIDLDSQNIDRDFADKYSITKQTLHTPWEPATANGCVVGLLTGDK 169
           +S VE+DLSIDL+S N+++  ADK   TKQTL T W+P  ANGC VGLL GDK
Sbjct: 155 TSEVEVDLSIDLESYNVEKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDK 207


>Medtr5g026040.1 | DNA-directed RNA polymerase III subunit RPC5-like
           protein | LC | chr5:10683871-10679367 | 20130731
          Length = 487

 Score =  156 bits (395), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 91/111 (81%)

Query: 59  DPMDEDTVEDQIVREIDVFFTPSLDENTELYVLQYPLRPSWRPYEFEERCKEVRLKPISS 118
           +PMDED  ED +VREIDVFF+PS+D++ +LYV++YPLRPSWRPYE +E+C+EVRLKP S 
Sbjct: 105 NPMDEDNEEDTVVREIDVFFSPSIDDDIKLYVMEYPLRPSWRPYELDEQCEEVRLKPDSL 164

Query: 119 RVEIDLSIDLDSQNIDRDFADKYSITKQTLHTPWEPATANGCVVGLLTGDK 169
            V +DLS+DL+S  +D +F+++   TKQTL T W+P+ ANGC VGLL GDK
Sbjct: 165 DVAVDLSVDLESSTVDEEFSNRLKYTKQTLSTTWKPSPANGCAVGLLMGDK 215