Miyakogusa Predicted Gene
- Lj0g3v0190909.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0190909.1 Non Characterized Hit- tr|B6U4G2|B6U4G2_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,46.32,0.00004,seg,NULL; TCP,Transcription factor TCP subgroup;
TCP,Transcription factor, TCP; FAMILY NOT NAMED,NUL,CUFF.12093.1
(329 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g114380.1 | TCP family transcription factor | HC | chr1:51... 249 2e-66
Medtr1g038650.1 | TCP family transcription factor | HC | chr1:14... 181 7e-46
Medtr1g038650.2 | TCP family transcription factor | HC | chr1:14... 181 7e-46
Medtr5g039600.1 | TCP family transcription factor | HC | chr5:17... 108 7e-24
Medtr2g006150.1 | TCP family transcription factor | HC | chr2:47... 107 1e-23
Medtr2g006150.2 | TCP family transcription factor | HC | chr2:47... 107 1e-23
Medtr4g108370.1 | TCP family transcription factor | HC | chr4:44... 101 9e-22
Medtr7g028160.1 | TCP family transcription factor | HC | chr7:94... 100 1e-21
Medtr1g063870.1 | TCP family transcription factor | HC | chr1:28... 96 3e-20
Medtr1g101810.4 | TCP family transcription factor | HC | chr1:45... 96 4e-20
Medtr1g101810.3 | TCP family transcription factor | HC | chr1:45... 96 4e-20
Medtr1g101810.2 | TCP family transcription factor | HC | chr1:45... 96 4e-20
Medtr1g101810.1 | TCP family transcription factor | HC | chr1:45... 96 5e-20
Medtr8g033070.1 | TCP family transcription factor | HC | chr8:12... 94 2e-19
>Medtr1g114380.1 | TCP family transcription factor | HC |
chr1:51614461-51616519 | 20130731
Length = 257
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/266 (56%), Positives = 161/266 (60%), Gaps = 17/266 (6%)
Query: 70 MSSSDGTT------NGSMIDPQRTNQQQQLSVKKPPSKDRHSKVDGRGRRIRMPIICAAR 123
MS+ DGTT NGS+IDP R QQL+VKKPP+KDRHSKVDGRGRRIRMPIICAAR
Sbjct: 1 MSNPDGTTTTTTTTNGSIIDPNR----QQLAVKKPPAKDRHSKVDGRGRRIRMPIICAAR 56
Query: 124 VFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSSVSVSLRG-AXXXXXXXX 182
VFQLTRELGHKSDGQTIEWLLRQAE FSS+SVSLRG +
Sbjct: 57 VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSVSLRGSSNSLPSPSS 116
Query: 183 XXXDHKPLLAPTPTPFILGKRIRTXXXXXXXXXXXXVGHSLVGSAAPAGLWALPARPDFG 242
DHKPLL +PTPFILGKRIRT S+ + PA LWALPARPDFG
Sbjct: 117 TSLDHKPLL--SPTPFILGKRIRTDDDSSSSSAKDDA-LSVGSLSTPAALWALPARPDFG 173
Query: 243 QIWSFXXXXXXXPEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGEASAARVGN 302
QIWSF MGEASAARVGN
Sbjct: 174 QIWSFAAAAA---GAPPPEMMVQSLSQQQHQVQANFFAHHHQQQQHQQAMGEASAARVGN 230
Query: 303 YLPGHLNLLASLSGGHGNSGRRDDDH 328
YLPGHLNLLASLSGGHGNSGRRDD+H
Sbjct: 231 YLPGHLNLLASLSGGHGNSGRRDDEH 256
>Medtr1g038650.1 | TCP family transcription factor | HC |
chr1:14250840-14248871 | 20130731
Length = 235
Score = 181 bits (460), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 121/246 (49%), Positives = 132/246 (53%), Gaps = 38/246 (15%)
Query: 90 QQQLSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEX 149
Q ++VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE
Sbjct: 22 QNAITVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEP 81
Query: 150 XXXXXXXXXXXXXXFSSVSVSLRGAXXXXXXXXXXXDHKPLLAPTPTPFILGKRIRTXXX 209
FSS+S +HKP L P+PFILGKR+R
Sbjct: 82 SIIAATGTGTTPASFSSLS-----------------EHKPFL--QPSPFILGKRLRDDDG 122
Query: 210 XXXXXXXXXVGHSLVGSAAPAGLWALPARPDFGQIWSFXXXXXXXPEMXXXXX------X 263
S+ AP GLW RPDF Q+WSF PE
Sbjct: 123 DAV---------SVAAPTAPPGLW----RPDFAQLWSFAAAAQTPPEGFSVSQHNSLFHH 169
Query: 264 XXXXXXXXXXXXXXXXXXXXXXXXXXXXMGEASAARVGNYLPGHLNLLASLSGGHGNSGR 323
MGEASAAR+GNYLPGHLNLLASLSGG+GNSGR
Sbjct: 170 QQQQQQQQHQQQQQQHHHQQHHQQQQGSMGEASAARLGNYLPGHLNLLASLSGGNGNSGR 229
Query: 324 RDDDHR 329
DD+ R
Sbjct: 230 GDDEDR 235
>Medtr1g038650.2 | TCP family transcription factor | HC |
chr1:14250840-14248871 | 20130731
Length = 235
Score = 181 bits (460), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 121/246 (49%), Positives = 132/246 (53%), Gaps = 38/246 (15%)
Query: 90 QQQLSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEX 149
Q ++VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE
Sbjct: 22 QNAITVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEP 81
Query: 150 XXXXXXXXXXXXXXFSSVSVSLRGAXXXXXXXXXXXDHKPLLAPTPTPFILGKRIRTXXX 209
FSS+S +HKP L P+PFILGKR+R
Sbjct: 82 SIIAATGTGTTPASFSSLS-----------------EHKPFL--QPSPFILGKRLRDDDG 122
Query: 210 XXXXXXXXXVGHSLVGSAAPAGLWALPARPDFGQIWSFXXXXXXXPEMXXXXX------X 263
S+ AP GLW RPDF Q+WSF PE
Sbjct: 123 DAV---------SVAAPTAPPGLW----RPDFAQLWSFAAAAQTPPEGFSVSQHNSLFHH 169
Query: 264 XXXXXXXXXXXXXXXXXXXXXXXXXXXXMGEASAARVGNYLPGHLNLLASLSGGHGNSGR 323
MGEASAAR+GNYLPGHLNLLASLSGG+GNSGR
Sbjct: 170 QQQQQQQQHQQQQQQHHHQQHHQQQQGSMGEASAARLGNYLPGHLNLLASLSGGNGNSGR 229
Query: 324 RDDDHR 329
DD+ R
Sbjct: 230 GDDEDR 235
>Medtr5g039600.1 | TCP family transcription factor | HC |
chr5:17429938-17427951 | 20130731
Length = 416
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 65/88 (73%)
Query: 87 TNQQQQLSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQ 146
++QQ++ K+ +KDRH+KVDGRGRRIRMP CAARVFQLTRELGHKSDG+TIEWLL+Q
Sbjct: 54 SDQQKKPPPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQ 113
Query: 147 AEXXXXXXXXXXXXXXXFSSVSVSLRGA 174
AE F+S+++SLR +
Sbjct: 114 AEPAVIAATGTGTIPANFTSLNISLRSS 141
>Medtr2g006150.1 | TCP family transcription factor | HC |
chr2:471446-468724 | 20130731
Length = 487
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 61/84 (72%), Gaps = 3/84 (3%)
Query: 94 SVKKPP---SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXX 150
+V PP +KDRH+KVDGRGRRIRMP CAARVFQLTRELGHKSDG+TIEWLL+QAE
Sbjct: 121 AVANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPA 180
Query: 151 XXXXXXXXXXXXXFSSVSVSLRGA 174
FS+++VSLR +
Sbjct: 181 IIAATGTGTIPANFSTLNVSLRSS 204
>Medtr2g006150.2 | TCP family transcription factor | HC |
chr2:471446-468724 | 20130731
Length = 447
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 61/84 (72%), Gaps = 3/84 (3%)
Query: 94 SVKKPP---SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXX 150
+V PP +KDRH+KVDGRGRRIRMP CAARVFQLTRELGHKSDG+TIEWLL+QAE
Sbjct: 121 AVANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPA 180
Query: 151 XXXXXXXXXXXXXFSSVSVSLRGA 174
FS+++VSLR +
Sbjct: 181 IIAATGTGTIPANFSTLNVSLRSS 204
>Medtr4g108370.1 | TCP family transcription factor | HC |
chr4:44961490-44959266 | 20130731
Length = 437
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 58/79 (73%), Gaps = 5/79 (6%)
Query: 96 KKPP-----SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXX 150
KKPP +KDRH+KV+GRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE
Sbjct: 88 KKPPPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPA 147
Query: 151 XXXXXXXXXXXXXFSSVSV 169
F+S+++
Sbjct: 148 VIAATGTGTIPANFTSLNI 166
>Medtr7g028160.1 | TCP family transcription factor | HC |
chr7:9485316-9483450 | 20130731
Length = 284
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 55/59 (93%)
Query: 90 QQQLSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
++QL+ K+ +KDRH+KV+GRGRRIRMP +CAAR+FQLTRELGHKSDG+TI+WLL+Q+E
Sbjct: 40 KKQLAPKRTSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSE 98
>Medtr1g063870.1 | TCP family transcription factor | HC |
chr1:28041642-28042798 | 20130731
Length = 205
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 54/60 (90%), Gaps = 3/60 (5%)
Query: 92 QLSVKKPPS---KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
+L+V++P S KDRH+KV+GRGRR+RMP +CAAR+FQLTRELGH+SDG+TIEWLLR AE
Sbjct: 38 KLTVRRPASRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAE 97
>Medtr1g101810.4 | TCP family transcription factor | HC |
chr1:45965204-45966803 | 20130731
Length = 337
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 49/60 (81%)
Query: 89 QQQQLSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
Q ++ K SKDRH+KV+GRGRRIR+P CAAR+FQLTRELGHKSDG+TI WLL QAE
Sbjct: 53 QTMTVAAAKRSSKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLEQAE 112
>Medtr1g101810.3 | TCP family transcription factor | HC |
chr1:45965204-45966803 | 20130731
Length = 337
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 49/60 (81%)
Query: 89 QQQQLSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
Q ++ K SKDRH+KV+GRGRRIR+P CAAR+FQLTRELGHKSDG+TI WLL QAE
Sbjct: 53 QTMTVAAAKRSSKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLEQAE 112
>Medtr1g101810.2 | TCP family transcription factor | HC |
chr1:45965204-45966803 | 20130731
Length = 337
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 49/60 (81%)
Query: 89 QQQQLSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
Q ++ K SKDRH+KV+GRGRRIR+P CAAR+FQLTRELGHKSDG+TI WLL QAE
Sbjct: 53 QTMTVAAAKRSSKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLEQAE 112
>Medtr1g101810.1 | TCP family transcription factor | HC |
chr1:45965265-45966764 | 20130731
Length = 367
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 49/60 (81%)
Query: 89 QQQQLSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
Q ++ K SKDRH+KV+GRGRRIR+P CAAR+FQLTRELGHKSDG+TI WLL QAE
Sbjct: 83 QTMTVAAAKRSSKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLEQAE 142
>Medtr8g033070.1 | TCP family transcription factor | HC |
chr8:12681955-12683583 | 20130731
Length = 333
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 46/53 (86%)
Query: 96 KKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
K+ +KDRH+KV+GRGRRIRMP CAAR+FQLTRELGHKSDG+TI WLL AE
Sbjct: 76 KRSSTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAE 128