Miyakogusa Predicted Gene

Lj0g3v0190579.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0190579.1 tr|A2Q1M9|A2Q1M9_MEDTR Pentatricopeptide
repeat-containing protein OS=Medicago truncatula
GN=MTR_2g0,82.76,0.0000001,seg,NULL,CUFF.12076.1
         (46 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g036560.1 | PPR containing plant-like protein | HC | chr2:...    60   4e-10

>Medtr2g036560.1 | PPR containing plant-like protein | HC |
          chr2:15824637-15820871 | 20130731
          Length = 849

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 26/29 (89%)

Query: 1  MEGTLFPNRPVLPVPANKPTQSLKFKPTL 29
          MEGTLFPNRPVLP+P  KPTQ+LKFKPT 
Sbjct: 6  MEGTLFPNRPVLPLPTKKPTQALKFKPTF 34