Miyakogusa Predicted Gene

Lj0g3v0190479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0190479.1 Non Characterized Hit- tr|B9SGV9|B9SGV9_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,31.58,2.4,seg,NULL,CUFF.12071.1
         (166 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g027700.1 | hypothetical protein | HC | chr2:10153517-1015...   110   6e-25

>Medtr2g027700.1 | hypothetical protein | HC |
           chr2:10153517-10154358 | 20130731
          Length = 146

 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 88/165 (53%), Gaps = 26/165 (15%)

Query: 4   DQRNKKRAREDDDGENEIGSSFENNNSNAKKRDVNGMSFMXXXXXXXXXXNGFFKGWDSS 63
           +Q   KRARE DD E +I  SFENNN  AKKRDV G SF                  +  
Sbjct: 2   EQEKNKRAREYDDIEAKIWFSFENNNKKAKKRDVCGTSFTKEKNEVE----------EKG 51

Query: 64  HFALGVFDFPWLKDGGVMSNSDDWFLDFEDNFLQSHTSSRND----HGGVDIFEEC-GLC 118
             A GVFDFPWLKD GV+   +D  +DFEDNFL S     N       G+D FEE   LC
Sbjct: 52  CLAFGVFDFPWLKD-GVIYKLEDCLIDFEDNFLSSLQDQDNTCFKVSSGIDFFEENDRLC 110

Query: 119 NIPEASSSHVQDAKFLEDDVGQQFEGNGLELEAEDVDCIWSSLLN 163
             P+AS           +D+   FE N LELEAED+DCI SSLLN
Sbjct: 111 EAPKASM----------EDLWLPFEVNRLELEAEDLDCICSSLLN 145