Miyakogusa Predicted Gene

Lj0g3v0189029.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0189029.1 tr|B9IQH3|B9IQH3_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_249644
PE=4,41.44,0.00000000003,seg,NULL; DEOXYNUCLEOSIDE KINASE,NULL;
DEOXYNUCLEOSIDE KINASE,Deoxynucleoside kinase,CUFF.12038.1
         (276 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g005360.1 | deoxyribonucleoside kinase | HC | chr3:177062-...   157   1e-38

>Medtr3g005360.1 | deoxyribonucleoside kinase | HC |
           chr3:177062-172572 | 20130731
          Length = 583

 Score =  157 bits (396), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/197 (50%), Positives = 107/197 (54%), Gaps = 21/197 (10%)

Query: 75  YNTACCVRRCFCRLTLTHXXXXXXXXXXXXXXXXWLLLNHSPNXXXXXXXXXXXXFPVAE 134
           Y+ A  VR CFC                      WLLL HS +             P  +
Sbjct: 82  YSNASYVRTCFCPTLTLTRHTTTTSTSNNTKNLPWLLLKHSQHSNATSQSSFHNN-PEQQ 140

Query: 135 EGEVKRDDGCAVXXXXXXXXXXXXXXXXXXXXXXXFRLNRR--QKGSSSSIPPSNPDLLA 192
                 DD  +                        FRLN R  QK  SSS PP   DLLA
Sbjct: 141 STPTTEDDSSSSSSSSTNTTSS-------------FRLNNRRHQKAESSSTPP---DLLA 184

Query: 193 IPGVGPRNLRKLVQKGIEGVAQLKQLYKDKFFGKSSEKMVEYLQSSVGIIHKNHAESITT 252
           IPGVGPRN RKLVQKGI+GVAQLKQLYKDKF GKSS++MVEYLQSSVGIIHKNHAESITT
Sbjct: 185 IPGVGPRNFRKLVQKGIQGVAQLKQLYKDKFIGKSSDQMVEYLQSSVGIIHKNHAESITT 244

Query: 253 FIKKSVEGDEEKEDKSS 269
           FIKKSV  DEE +D SS
Sbjct: 245 FIKKSV--DEEVDDNSS 259