Miyakogusa Predicted Gene

Lj0g3v0188969.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0188969.1 Non Characterized Hit- tr|I1MSR6|I1MSR6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.19477
PE,63.16,0.0000000005,seg,NULL,CUFF.12027.1
         (189 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g128290.1 | integral membrane Yip1-family protein | HC | c...    68   5e-12

>Medtr4g128290.1 | integral membrane Yip1-family protein | HC |
           chr4:53416187-53412714 | 20130731
          Length = 281

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 39/58 (67%), Gaps = 14/58 (24%)

Query: 130 TRPKISSSGFRLAPNTLTEPVRE--------------LVVFPNPYREDPGKALRDWDL 173
           TRP IS+SGF  APNTLTEPV +              LVVFPNP REDPGKALRDWDL
Sbjct: 91  TRPDISTSGFGPAPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPNREDPGKALRDWDL 148