Miyakogusa Predicted Gene

Lj0g3v0188699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0188699.1 tr|B9N7R8|B9N7R8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_673686 PE=4
SV=1,73.25,0,Ribonuclease H-like,Ribonuclease H-like domain; C2H2 and
C2HC zinc fingers,NULL; BED zinc finger,Zin,CUFF.12024.1
         (676 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g036325.1 | hypothetical protein | LC | chr4:13081348-1308...    70   6e-12

>Medtr4g036325.1 | hypothetical protein | LC |
           chr4:13081348-13082899 | 20130731
          Length = 204

 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 74/124 (59%), Gaps = 5/124 (4%)

Query: 138 MIMLHGYP-LAMVEHVGFKVFVKNLQPLFEFMPNSGIEVYCLKIYQREKERVYNMINKLH 196
           MI++H YP L++V+H+GF+ + + LQ LF+    + ++   +KIY+ EK +   +++K+ 
Sbjct: 1   MIIIHEYPPLSIVDHLGFRAYSEGLQHLFKVPSRNTVKSDIIKIYENEKLKTMGLLDKIE 60

Query: 197 GRINL-SIELWSSADNSSHLCIAAHYIDEEWTLQKKVLNFVTLDPSHTEDLLPEAILKCL 255
            +I L S  L +S     ++ I AHYI ++W++Q ++L     + +    +LP +  + L
Sbjct: 61  SKIALTSYMLTASNQKKGYMVITAHYISDDWSMQSRILRE---NKTTGNKMLPRSRREGL 117

Query: 256 SEWD 259
           +E +
Sbjct: 118 TESN 121