Miyakogusa Predicted Gene

Lj0g3v0188359.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0188359.2 Non Characterized Hit- tr|I3S3C8|I3S3C8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.82,0,seg,NULL;
Q9LX21_ARATH_Q9LX21;,Domain of unknown function DUF367; DUF367,Domain
of unknown function ,CUFF.12014.2
         (171 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g091510.1 | ribosome biogenesis protein, putative | HC | c...   246   8e-66

>Medtr8g091510.1 | ribosome biogenesis protein, putative | HC |
           chr8:38188834-38193130 | 20130731
          Length = 273

 Score =  246 bits (628), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 121/169 (71%), Positives = 127/169 (75%), Gaps = 1/169 (0%)

Query: 2   GNNKQQRFRTHXXXXXXXXXXXXXXXXXXXXXXXXXLPE-SGEHQEELTTPKIKLAMWDF 60
           GNN+Q RFR H                           E   E  +EL  PKIKLAMWDF
Sbjct: 3   GNNRQHRFRNHRPNHAQSSRHNQLSLDNENQSCVQEPCEGDNEESDELAQPKIKLAMWDF 62

Query: 61  GQCDAKKCTGRKLSRFGMLKELRVSNGFGGIVLSPVGKSCVSREDYSLIQNKGLAVVDCS 120
           GQCDAKKCTGRKLSR G LKELRV+NGFGGI LSPVG  CVSREDYSLIQNKGLAVVDCS
Sbjct: 63  GQCDAKKCTGRKLSRLGFLKELRVTNGFGGIALSPVGTQCVSREDYSLIQNKGLAVVDCS 122

Query: 121 WARLDDVPFVRLRCSAPRLLPWLVAANPINYGRPCQLSCVEALSAALII 169
           WARLDDVPFV+LRC+APRLLPWLVAANPINYGRPCQLSCVEAL+AAL I
Sbjct: 123 WARLDDVPFVKLRCAAPRLLPWLVAANPINYGRPCQLSCVEALAAALTI 171