Miyakogusa Predicted Gene

Lj0g3v0187669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0187669.1 Non Characterized Hit- tr|I0Z5K8|I0Z5K8_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,41.82,3e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
CDC27,DNA polymerase subunit Cdc27,CUFF.11933.1
         (120 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g075820.2 | DNA polymerase subunit Cdc27 | HC | chr2:31720...   205   9e-54
Medtr2g075820.1 | DNA polymerase subunit Cdc27 | HC | chr2:31720...   204   1e-53

>Medtr2g075820.2 | DNA polymerase subunit Cdc27 | HC |
           chr2:31720156-31725437 | 20130731
          Length = 526

 Score =  205 bits (521), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 98/120 (81%), Positives = 110/120 (91%)

Query: 1   MAQTKTLALIDEIESLVSDKLQVVSYKWLSRSYMISSDEAKRLLQEFVQKHEGGLEVVYA 60
           M+ T+TL+LI EIESLVSD+LQVVSYKWLSRSY ISS+EAKRLL+EFV+KHE GLEVVYA
Sbjct: 1   MSNTETLSLIHEIESLVSDQLQVVSYKWLSRSYQISSNEAKRLLREFVEKHEDGLEVVYA 60

Query: 61  LSGWLKSSHPSYHIRLVSGSKVAEAQKVFDGNCSVQVYSVQASIPKDPAVLWNTEFIQAE 120
           LSGWLKSS PSYH+RLV+G+ +AEAQ+ FDG CSVQVYSVQASIPKD AVLWN EFIQAE
Sbjct: 61  LSGWLKSSIPSYHVRLVTGTMLAEAQEEFDGKCSVQVYSVQASIPKDAAVLWNAEFIQAE 120


>Medtr2g075820.1 | DNA polymerase subunit Cdc27 | HC |
           chr2:31720156-31725437 | 20130731
          Length = 527

 Score =  204 bits (520), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 98/120 (81%), Positives = 110/120 (91%)

Query: 1   MAQTKTLALIDEIESLVSDKLQVVSYKWLSRSYMISSDEAKRLLQEFVQKHEGGLEVVYA 60
           M+ T+TL+LI EIESLVSD+LQVVSYKWLSRSY ISS+EAKRLL+EFV+KHE GLEVVYA
Sbjct: 1   MSNTETLSLIHEIESLVSDQLQVVSYKWLSRSYQISSNEAKRLLREFVEKHEDGLEVVYA 60

Query: 61  LSGWLKSSHPSYHIRLVSGSKVAEAQKVFDGNCSVQVYSVQASIPKDPAVLWNTEFIQAE 120
           LSGWLKSS PSYH+RLV+G+ +AEAQ+ FDG CSVQVYSVQASIPKD AVLWN EFIQAE
Sbjct: 61  LSGWLKSSIPSYHVRLVTGTMLAEAQEEFDGKCSVQVYSVQASIPKDAAVLWNAEFIQAE 120