Miyakogusa Predicted Gene

Lj0g3v0187539.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0187539.1 Non Characterized Hit- tr|D8QRI3|D8QRI3_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,54.32,5e-19,AUTOPHAGY PROTEIN 12,Autophagy-related protein
12; Ubiquitin-like,NULL; APG12,Autophagy-related prot,CUFF.11935.1
         (94 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g020500.1 | ubiquitin ATG12-like protein | HC | chr8:71986...   187   2e-48
Medtr8g020500.2 | ubiquitin ATG12-like protein | HC | chr8:71987...   167   2e-42

>Medtr8g020500.1 | ubiquitin ATG12-like protein | HC |
          chr8:7198686-7202464 | 20130731
          Length = 95

 Score =  187 bits (474), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 86/93 (92%), Positives = 92/93 (98%)

Query: 2  SVESPSSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRDTLFVYVNSA 61
          + ESP+SVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHR++LFVYVNSA
Sbjct: 3  AAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVNSA 62

Query: 62 FSPNPDELIIDLYNNFGFDGKLIVNYACSMAWG 94
          FSPNPDEL+IDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 63 FSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95


>Medtr8g020500.2 | ubiquitin ATG12-like protein | HC |
           chr8:7198723-7202429 | 20130731
          Length = 124

 Score =  167 bits (422), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/80 (95%), Positives = 80/80 (100%)

Query: 15  HLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRDTLFVYVNSAFSPNPDELIIDLY 74
           HLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHR++LFVYVNSAFSPNPDEL+IDLY
Sbjct: 45  HLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVNSAFSPNPDELVIDLY 104

Query: 75  NNFGFDGKLIVNYACSMAWG 94
           NNFGFDGKL+VNYACSMAWG
Sbjct: 105 NNFGFDGKLVVNYACSMAWG 124