Miyakogusa Predicted Gene

Lj0g3v0187299.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0187299.1 tr|F4JFQ3|F4JFQ3_ARATH Methyl-CpG-binding domain
protein 4 OS=Arabidopsis thaliana GN=At3g07930
PE=4,33.18,4e-18,seg,NULL; 5-METHYLCYTOSINE G/T MISMATCH-SPECIFIC DNA
GLYCOSYLASE,NULL,CUFF.11921.1
         (280 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g033105.1 | hypothetical protein | LC | chr6:10427112-1042...    79   6e-15
Medtr0037s0060.3 | base excision DNA repair protein, HhH-GPD fam...    74   1e-13
Medtr0037s0060.1 | base excision DNA repair protein, HhH-GPD fam...    74   1e-13
Medtr0037s0060.2 | base excision DNA repair protein, HhH-GPD fam...    74   1e-13
Medtr0037s0250.1 | base excision DNA repair protein, HhH-GPD fam...    72   6e-13
Medtr0037s0250.2 | base excision DNA repair protein, HhH-GPD fam...    71   9e-13

>Medtr6g033105.1 | hypothetical protein | LC |
           chr6:10427112-10425913 | 20130731
          Length = 191

 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 45/73 (61%), Gaps = 5/73 (6%)

Query: 173 GKAKDKRKNTTLSASQKWDEAYRKRTPDNTWVPPRS-----HLHLIQEDHIRDPWRVLVI 227
            + K KRK      + +  E Y+++TPDN WVPPRS        L+QEDH  DPWRV+VI
Sbjct: 106 SRRKSKRKTKPFLKANRCREVYKRKTPDNNWVPPRSTPPLVEKPLLQEDHFHDPWRVIVI 165

Query: 228 CMLLNITTGRQVC 240
           CMLLN T   QVC
Sbjct: 166 CMLLNRTKCEQVC 178


>Medtr0037s0060.3 | base excision DNA repair protein, HhH-GPD family
           protein | LC | scaffold0037:33142-29197 | 20130731
          Length = 282

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 176 KDKRKNTTLSASQKWDEAYRKRTPDNTWVPPRS-----HLHLIQEDHIRDPWRVLVICML 230
           K KRK      + +  EAY+++T DN WVPPRS        L+QEDH  DPWRV+VICML
Sbjct: 111 KSKRKTKPFLKADRCREAYKRKTLDNNWVPPRSTPPLVEKPLLQEDHFHDPWRVIVICML 170

Query: 231 LNITTGRQV 239
           LN T G+Q 
Sbjct: 171 LNRTKGQQA 179


>Medtr0037s0060.1 | base excision DNA repair protein, HhH-GPD family
           protein | LC | scaffold0037:32923-29197 | 20130731
          Length = 282

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 176 KDKRKNTTLSASQKWDEAYRKRTPDNTWVPPRS-----HLHLIQEDHIRDPWRVLVICML 230
           K KRK      + +  EAY+++T DN WVPPRS        L+QEDH  DPWRV+VICML
Sbjct: 111 KSKRKTKPFLKADRCREAYKRKTLDNNWVPPRSTPPLVEKPLLQEDHFHDPWRVIVICML 170

Query: 231 LNITTGRQV 239
           LN T G+Q 
Sbjct: 171 LNRTKGQQA 179


>Medtr0037s0060.2 | base excision DNA repair protein, HhH-GPD family
           protein | LC | scaffold0037:32923-29197 | 20130731
          Length = 282

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 176 KDKRKNTTLSASQKWDEAYRKRTPDNTWVPPRS-----HLHLIQEDHIRDPWRVLVICML 230
           K KRK      + +  EAY+++T DN WVPPRS        L+QEDH  DPWRV+VICML
Sbjct: 111 KSKRKTKPFLKADRCREAYKRKTLDNNWVPPRSTPPLVEKPLLQEDHFHDPWRVIVICML 170

Query: 231 LNITTGRQV 239
           LN T G+Q 
Sbjct: 171 LNRTKGQQA 179


>Medtr0037s0250.1 | base excision DNA repair protein, HhH-GPD family
           protein | HC | scaffold0037:102540-105043 | 20130731
          Length = 252

 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 176 KDKRKNTTLSASQKWDEAYRKRTPDNTWVPPRSHLH--LIQEDHIRDPWRVLVICMLLNI 233
           K KRK      + +  EAY+++T DN WVPP S     L+QE H  DPWRV+VICMLLN 
Sbjct: 117 KSKRKTKPFLKADRCREAYKRKTLDNNWVPPPSGFEFPLLQEHHFHDPWRVIVICMLLNR 176

Query: 234 TTGRQV 239
           T G+Q 
Sbjct: 177 TLGKQT 182


>Medtr0037s0250.2 | base excision DNA repair protein, HhH-GPD family
           protein | HC | scaffold0037:102615-107252 | 20130731
          Length = 280

 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 176 KDKRKNTTLSASQKWDEAYRKRTPDNTWVPPRSHLH--LIQEDHIRDPWRVLVICMLLNI 233
           K KRK      + +  EAY+++T DN WVPP S     L+QE H  DPWRV+VICMLLN 
Sbjct: 114 KSKRKTKPFLKADRCREAYKRKTLDNNWVPPPSGFEFPLLQEHHFHDPWRVIVICMLLNR 173

Query: 234 TTGRQV 239
           T G+Q 
Sbjct: 174 TLGKQT 179