Miyakogusa Predicted Gene

Lj0g3v0187189.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0187189.2 tr|A9RJA3|A9RJA3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_159404,36.02,4e-17,UNCHARACTERIZED PUTATIVE
METHYLTRANSFERASE,NULL; SET domain,NULL; no
description,NULL,CUFF.11916.2
         (183 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g023320.1 | rubisco methyltransferase family protein | HC ...   356   7e-99
Medtr3g082690.1 | rubisco methyltransferase family protein | HC ...    69   2e-12

>Medtr6g023320.1 | rubisco methyltransferase family protein | HC |
           chr6:8129384-8121326 | 20130731
          Length = 501

 Score =  356 bits (914), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 166/182 (91%), Positives = 176/182 (96%)

Query: 1   MYEKKQGKKSFWYPYIRELDRQRGRGQMAVESPLLWSESELAYLAGSPLKDEILKRIEGI 60
           MYEKKQGKKSFWYPYIRELDRQRGRGQ+AVESPLLWSESELAYL GSPLKDEI+KRIEGI
Sbjct: 154 MYEKKQGKKSFWYPYIRELDRQRGRGQLAVESPLLWSESELAYLEGSPLKDEIVKRIEGI 213

Query: 61  KRGYDELDTVWCMSGSLFQQYPYDIPTEAFPFEIFKQAFAAIQSCVVHLQKVSLARRFAL 120
           ++ Y+ELDTVW MSGSLFQQYPYD+PTEAFPFEIFKQAFAA+QSCVVHLQ VSLARRFAL
Sbjct: 214 RKEYNELDTVWFMSGSLFQQYPYDLPTEAFPFEIFKQAFAAVQSCVVHLQNVSLARRFAL 273

Query: 121 VPLGPPLLTYRSNCKAMLTAVEGAVELVVDRPYKAGDPIVVWCGPQPNTKLLTNYGFVDE 180
           VPLGPPLL Y SNCKAMLTAV+GAV+LVVDRPYKAGDPIVVWCGPQPNTKLLTNYGFVDE
Sbjct: 274 VPLGPPLLAYCSNCKAMLTAVDGAVQLVVDRPYKAGDPIVVWCGPQPNTKLLTNYGFVDE 333

Query: 181 EN 182
           +N
Sbjct: 334 DN 335


>Medtr3g082690.1 | rubisco methyltransferase family protein | HC |
           chr3:37307346-37311457 | 20130731
          Length = 497

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 21/181 (11%)

Query: 8   KKSFWYPYIRELDRQRGRGQMAVESPLLWSESEL-AYLAGSPLKDEILKRIEGIKRGYDE 66
           K S W+ YI  L RQ         S L WS++EL  YL  S +++  ++R   +   Y++
Sbjct: 155 KSSRWFSYISALPRQ-------PYSLLYWSQAELDRYLEASQIRERAIERTNNVIGTYND 207

Query: 67  LDTVWCMSGSLFQQYPYDIPTEAFPFEIFKQAFAAIQSCVVHLQKVSLARRFALVPLGPP 126
                 M   +F +YP   P E F  E FK +F  + S +V L   S+  + ALVP    
Sbjct: 208 ------MRVRIFSKYPDFFPEEVFNIESFKWSFGILFSRMVRLP--SMDGKNALVPWAD- 258

Query: 127 LLTYRSNCKAMLTAVEGAVELV--VDRPYKAGDPIVVWCGPQPNTKLLTNYGFVDEE--N 182
           ++ +    +  L   + +  +V   DRPY+ G+ + +  G + N +LL +YGFV +E  N
Sbjct: 259 MMNHSCEVETFLDYDKSSKGIVFPTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTN 318

Query: 183 P 183
           P
Sbjct: 319 P 319