Miyakogusa Predicted Gene

Lj0g3v0186219.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0186219.1 Non Characterized Hit- tr|F4IN72|F4IN72_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At2,64.91,0.000000000000009,seg,NULL; RNase III
domain-like,Ribonuclease III domain; Ribonuclease III
family,Ribonuclease III
do,NODE_34288_length_1750_cov_19.158857.path1.1
         (538 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g095410.1 | ribonuclease III domain protein | HC | chr4:39...   771   0.0  
Medtr5g016070.1 | ribonuclease III domain protein | HC | chr5:56...   770   0.0  

>Medtr4g095410.1 | ribonuclease III domain protein | HC |
           chr4:39773237-39768149 | 20130731
          Length = 530

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/507 (73%), Positives = 422/507 (83%), Gaps = 11/507 (2%)

Query: 32  NPLRITTKTRHPTTQILRISAVAIDPPPQELPQNSPRRLLQELAEXXXXXXXXXXXX--X 89
           NP++  T       + L I A+  +P    LP NSP+RLL+EL +               
Sbjct: 22  NPIQFPTNKTITPQKTLHIYALTTNP----LPPNSPQRLLKELEQHKNKTHSPNKKTPPR 77

Query: 90  XFVLTPPVNDKKLANRLLNSPQLTLNNFPVLSSCLPYAKLNDNDNAWMEEHLMEAKQALG 149
             +L PP+ +K L    +NSPQLTL+ FP+LSSCLP+A L   D+AWME HL+E KQALG
Sbjct: 78  TTILKPPLRNKNL----INSPQLTLSTFPLLSSCLPHAPLKTTDSAWMETHLLEVKQALG 133

Query: 150 YPLEPSEEVMMGEGNPAKMLDTLLYLAFQHPKCERSRARHVRCAHSRLVFLGQYVLELAL 209
           YPL+P +E++  E NPAK  DTLLYLAFQHP C R + RHVR AHSRL FLGQYV+ELAL
Sbjct: 134 YPLQPFDEMLGEEDNPAKQFDTLLYLAFQHPTC-RGKGRHVRSAHSRLFFLGQYVIELAL 192

Query: 210 AEFFLQRYPRESPGPMRERVFGLIGKRSLPMWIKAASLQNLIFPNVNMDKLVRKDREPIV 269
            EFFLQRYPRE+ GPMRERVFGL+GK  LP WIK ASL  L+FPNV+MDKLVRK+RE I 
Sbjct: 193 GEFFLQRYPREAVGPMRERVFGLVGKHRLPKWIKNASLHGLVFPNVDMDKLVRKEREQIA 252

Query: 270 KSVFWALFGAIYLCFGMPEVYRVLFEVFGMDLEAEYCQPKLRRQLEDIDHVSAEFKGKLS 329
           KSVFWALFGAIYLCFGMPEVYR+LFEVFGMD +AE CQP+LR+QLEDIDHVSAEF+GKLS
Sbjct: 253 KSVFWALFGAIYLCFGMPEVYRILFEVFGMDPDAEECQPRLRKQLEDIDHVSAEFEGKLS 312

Query: 330 WQDVVAYKPPADALFANPRLFRACIPPGMHRFRGNIWDYDSRPQVMRILGYPLDMEDRIP 389
           WQD+VAYKPPADALFA+PRLFRACIPPGMHRFRGN+WDYDSRP+VM+ILGYPL+M DRIP
Sbjct: 313 WQDMVAYKPPADALFAHPRLFRACIPPGMHRFRGNVWDYDSRPRVMQILGYPLEMTDRIP 372

Query: 390 GITDARNIELGLGLQLCFLHPSNYKFEHPRFCYERLEYLGQKIQDLVMAERLLMKHLDAP 449
            IT+ARN+ELGLGLQLCFLHPSNYKF+HPRFCYERLEYLGQKI DLVMAERLLMKHLDAP
Sbjct: 373 EITEARNVELGLGLQLCFLHPSNYKFDHPRFCYERLEYLGQKIADLVMAERLLMKHLDAP 432

Query: 450 GFWIQEKHRRILMNKYCGRYLRAKQLHHYIIYSDKVKDAYGRSHRLRNPATTSVQQALHG 509
           G+W+QEKHRR LMN+YCG YLRAKQLH +IIYSDKV+ +Y RSHRLRNPAT SVQQALHG
Sbjct: 433 GYWLQEKHRRTLMNRYCGMYLRAKQLHRFIIYSDKVRSSYERSHRLRNPATVSVQQALHG 492

Query: 510 LSYAVYGKRDVRRLMFEVFDYEQVQPR 536
           LSYAVYGKRDVRRLMFEVFD EQ+QP+
Sbjct: 493 LSYAVYGKRDVRRLMFEVFDVEQIQPK 519


>Medtr5g016070.1 | ribonuclease III domain protein | HC |
           chr5:5683701-5689917 | 20130731
          Length = 530

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/532 (70%), Positives = 433/532 (81%), Gaps = 6/532 (1%)

Query: 11  MELSSSFLLPHKPLHSSSYLHNP---LRITTKTRHPTTQILRISAVAIDPPPQELPQNSP 67
           MELSSSF L  KP + S         ++I  K        L + AVAIDP       N+P
Sbjct: 1   MELSSSFSLSPKPTNFSFSSSFSPFPIQILIKNTKSRNYPLHVLAVAIDPTKDFPRNNNP 60

Query: 68  RRLLQELAEXXXXXXXXXXXX-XXFVLTPPVNDKKLANRLLNSPQLTLNNFPVLSSCLPY 126
           +RLL+ELAE               ++L PP++DKKLA R LNSPQL+L +FP+LSSCLP 
Sbjct: 61  QRLLKELAERKKITNPKSKSPPRRYILKPPLDDKKLAERFLNSPQLSLKSFPLLSSCLPS 120

Query: 127 AKLNDNDNAWMEEHLMEAKQALGYPLEPSEEVMMGEGNPAKMLDTLLYLAFQHPKCERSR 186
            +LN+ D  W++E+L+EAKQALGY LEPSE   + + NPAK  DTLLYLAFQHP CER++
Sbjct: 121 LRLNNADKLWIDEYLLEAKQALGYSLEPSE--TLEDDNPAKQFDTLLYLAFQHPSCERTK 178

Query: 187 ARHVRCAHSRLVFLGQYVLELALAEFFLQRYPRESPGPMRERVFGLIGKRSLPMWIKAAS 246
            +HVR  HSRL FLGQYVLELALAEFFLQRYPRE PGPMRERV+GLIGK +LP WIKAAS
Sbjct: 179 QKHVRSGHSRLFFLGQYVLELALAEFFLQRYPRELPGPMRERVYGLIGKENLPKWIKAAS 238

Query: 247 LQNLIFPNVNMDKLVRKDREPIVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDLEAEYC 306
           LQNLIFP  NMDK+VR+DRE  VKSVFWALFGAIYLCFG+PEVYRVLFEVFGMD + E C
Sbjct: 239 LQNLIFPYDNMDKIVRRDREGPVKSVFWALFGAIYLCFGLPEVYRVLFEVFGMDPDDEDC 298

Query: 307 QPKLRRQLEDIDHVSAEFKGKLSWQDVVAYKPPADALFANPRLFRACIPPGMHRFRGNIW 366
           QP+ RRQLED+D+VSAEF+ KL+WQD+VAYKPPADALF +PRLFRAC+PPGMHRFRGNIW
Sbjct: 299 QPRERRQLEDVDYVSAEFENKLNWQDIVAYKPPADALFTHPRLFRACVPPGMHRFRGNIW 358

Query: 367 DYDSRPQVMRILGYPLDMEDRIPGITDARNIELGLGLQLCFLHPSNYKFEHPRFCYERLE 426
           DYDSRPQVMR LGYPL+M DRIP IT+ARNIELGLGLQLCFLHPS YKFEHPRFC+ERLE
Sbjct: 359 DYDSRPQVMRALGYPLEMTDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLE 418

Query: 427 YLGQKIQDLVMAERLLMKHLDAPGFWIQEKHRRILMNKYCGRYLRAKQLHHYIIYSDKVK 486
           Y+G+ IQDLVMAERLLMKHLDAPG W+QEKHRRIL+NK+CGRYLRAKQLH +IIY D V+
Sbjct: 419 YVGKTIQDLVMAERLLMKHLDAPGLWLQEKHRRILLNKFCGRYLRAKQLHRFIIYDDNVQ 478

Query: 487 DAYGRSHRLRNPATTSVQQALHGLSYAVYGKRDVRRLMFEVFDYEQVQPRTI 538
           +AY R+ R RNPATT+V QA+HGLSY VYGKRDVRRLMFE FD+EQ+QP+ +
Sbjct: 479 NAYERNRRRRNPATTAVNQAIHGLSYLVYGKRDVRRLMFEYFDFEQIQPKEV 530