Miyakogusa Predicted Gene

Lj0g3v0185389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0185389.1 Non Characterized Hit- tr|B9FKR2|B9FKR2_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,48.89,5e-17,seg,NULL; DUF4228,Protein of unknown function
DUF4228,CUFF.11775.1
         (192 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g016150.1 | plant/F28N24-12 protein | HC | chr2:4885427-48...   165   2e-41
Medtr3g031140.1 | DUF4228 domain protein | HC | chr3:26925327-26...   112   1e-25
Medtr5g074290.1 | DUF4228 domain protein | HC | chr5:31537856-31...   112   2e-25

>Medtr2g016150.1 | plant/F28N24-12 protein | HC |
           chr2:4885427-4884867 | 20130731
          Length = 186

 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/186 (59%), Positives = 122/186 (65%), Gaps = 6/186 (3%)

Query: 13  MRNSIRCCISCILPCGALDVIRIVHCNGKVEEISGSIKASEIMKAHPKHVLKKPSSPSTH 72
           MRNSIRCCISCILPCGALDVIRIVHCNG+VEEISGSIKASEIMK +PKHVLKKPSSPST 
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHCNGRVEEISGSIKASEIMKTYPKHVLKKPSSPSTQ 60

Query: 73  D-GVVPKIVVVPPDAELQRGKIYFLMPLPSPAPXXXXXXXXXXXXXXXXXXXXX-----X 126
           D GVVPKIVVVPPDA+LQRGKIYFLMPLP+P P                           
Sbjct: 61  DGGVVPKIVVVPPDADLQRGKIYFLMPLPTPPPPDKNNHRHSKNSSVRKKRKEQNERILT 120

Query: 127 XXXXXXXXXXXXXVYTANLNLLVSNDRYLTEILSEKLSTQXXXXXXXXXXXXPHLESISE 186
                            +  L+VS+D+YLTEILSEK+ +Q            PHLESISE
Sbjct: 121 NNSRSNGNSNSNNNIENSATLVVSSDQYLTEILSEKVCSQRDRRRGRVAVWRPHLESISE 180

Query: 187 SPSSDL 192
           SP++ L
Sbjct: 181 SPTNHL 186


>Medtr3g031140.1 | DUF4228 domain protein | HC |
           chr3:26925327-26926335 | 20130731
          Length = 170

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 70/89 (78%), Gaps = 4/89 (4%)

Query: 13  MRNSIRCCISCILPCGALDVIRIVHCNGKVEEISGSIKASEIMKAHPKHVLKKPSSPSTH 72
           M NS+RCC++C+LPCGALD+IRIVH NG V+EI+ SI A E+++A+P HVL KPSS    
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGCVDEITHSITAGEVLQANPNHVLSKPSS---- 56

Query: 73  DGVVPKIVVVPPDAELQRGKIYFLMPLPS 101
            GVV +I+++ P+ EL+RG IYFL+P  S
Sbjct: 57  QGVVRRILIISPETELKRGSIYFLIPATS 85


>Medtr5g074290.1 | DUF4228 domain protein | HC |
           chr5:31537856-31538895 | 20130731
          Length = 160

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 70/89 (78%), Gaps = 4/89 (4%)

Query: 13  MRNSIRCCISCILPCGALDVIRIVHCNGKVEEISGSIKASEIMKAHPKHVLKKPSSPSTH 72
           M NS+RCC++C+LPCGALD+IRIVH NG VEEI+  I A E++KA+P HVL KPSS    
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPISAGEVLKANPNHVLSKPSS---- 56

Query: 73  DGVVPKIVVVPPDAELQRGKIYFLMPLPS 101
           +GVV +I+++ P+ EL+RG IYFL+P  S
Sbjct: 57  EGVVRRILILSPETELKRGSIYFLIPSTS 85