Miyakogusa Predicted Gene

Lj0g3v0185319.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0185319.1 Non Characterized Hit- tr|B8ALH3|B8ALH3_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,61.54,3e-19,seg,NULL; Mog1p/PsbP-like,Mog1/PsbP/DUF1795,
alpha/beta/alpha sandwich; no description,Mog1/PsbP, al,CUFF.11768.1
         (145 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g115410.1 | photosystem II reaction center PsbP family pro...   240   4e-64
Medtr7g023290.1 | oxygen-evolving complex/thylakoid lumenal 25.6...    62   2e-10
Medtr7g023290.2 | oxygen-evolving complex/thylakoid lumenal 25.6...    62   2e-10

>Medtr1g115410.1 | photosystem II reaction center PsbP family
           protein | HC | chr1:52104806-52107080 | 20130731
          Length = 234

 Score =  240 bits (612), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 113/145 (77%), Positives = 122/145 (84%)

Query: 1   MAVSSCSLSWTSPCVSHKLNLPHSNHLPRITSTSHSNNVSCAXXXXXXXXXHSQRRLLLL 60
           M VSSCSL+WTS  +SHKLNLPHSNHL R T+TS SNNVSCA         H QRR LLL
Sbjct: 1   MVVSSCSLTWTSSYLSHKLNLPHSNHLLRNTTTSSSNNVSCAMETTSSTERHCQRRPLLL 60

Query: 61  GIGAITANLQPTRLLFAEEIPDRYRAFVDYSDGYSYVYPSDWKEFDFRAHDSAFKDRYLQ 120
           GIGA+TANL P   L AEEIPDRYR+FVDY DGYSY+YPSDWKEFDFRAHDSAFKDRYLQ
Sbjct: 61  GIGALTANLLPANSLLAEEIPDRYRSFVDYEDGYSYIYPSDWKEFDFRAHDSAFKDRYLQ 120

Query: 121 LQNVRVRFLPTEKKDIRDMGPIEEV 145
           LQNVRVRF+PTEKKDIRD+GP+EEV
Sbjct: 121 LQNVRVRFIPTEKKDIRDLGPMEEV 145


>Medtr7g023290.1 | oxygen-evolving complex/thylakoid lumenal 25.6
           kDa protein | HC | chr7:7626263-7621406 | 20130731
          Length = 240

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%)

Query: 76  FAEEIPDRYRAFVDYSDGYSYVYPSDWKEFDFRAHDSAFKDRYLQLQNVRVRFLPTEKKD 135
           FA +    ++  VD  DGY +VYP  W+E      D  FKD    L+NV V  +PT K+D
Sbjct: 82  FAADNKSGFQPVVDRKDGYQFVYPFGWQEVVIEGQDKVFKDVIEPLENVSVTMIPTSKQD 141

Query: 136 IRDMGPIEEV 145
           I++ G  E+V
Sbjct: 142 IKEFGSPEQV 151


>Medtr7g023290.2 | oxygen-evolving complex/thylakoid lumenal 25.6
           kDa protein | HC | chr7:7626267-7621406 | 20130731
          Length = 237

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%)

Query: 76  FAEEIPDRYRAFVDYSDGYSYVYPSDWKEFDFRAHDSAFKDRYLQLQNVRVRFLPTEKKD 135
           FA +    ++  VD  DGY +VYP  W+E      D  FKD    L+NV V  +PT K+D
Sbjct: 79  FAADNKSGFQPVVDRKDGYQFVYPFGWQEVVIEGQDKVFKDVIEPLENVSVTMIPTSKQD 138

Query: 136 IRDMGPIEEV 145
           I++ G  E+V
Sbjct: 139 IKEFGSPEQV 148