Miyakogusa Predicted Gene

Lj0g3v0185019.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0185019.1 Non Characterized Hit- tr|I1FVB4|I1FVB4_AMPQE
Uncharacterized protein OS=Amphimedon queenslandica
GN,25.7,0.000000000002,Vps39_2,Vacuolar sorting protein
39/Transforming growth factor beta receptor-associated domain 2;
TG,CUFF.11742.1
         (217 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g077680.1 | vam6/Vps39-like protein | HC | chr8:33049752-3...   317   7e-87
Medtr5g020140.2 | vam6/Vps39-like protein | HC | chr5:7673955-76...   313   1e-85
Medtr5g020140.1 | vam6/Vps39-like protein | HC | chr5:7674026-76...   237   6e-63

>Medtr8g077680.1 | vam6/Vps39-like protein | HC |
           chr8:33049752-33042308 | 20130731
          Length = 992

 Score =  317 bits (811), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 163/217 (75%), Positives = 177/217 (81%)

Query: 1   MSGYNPEALLKRLPSDALYEERAILLGKMNQHELTLSLYVHKLHVPELALSYCDRVYGST 60
           +SGYNPEALLK LPSDALYEERAILLGKMNQHEL LSLYVHKLHVPELALSYCD VY S 
Sbjct: 703 ISGYNPEALLKLLPSDALYEERAILLGKMNQHELALSLYVHKLHVPELALSYCDHVYESA 762

Query: 61  HKPSVTSPSNIYLMLLQIYLNPRRTTKNYEKRITNLLSPRSTTLPRANSKILLKTRSRGS 120
           HK SV S SNIYLMLLQIYLNPRRTTKNYEK+I+NLLSPR+ ++ +  SK L +T SRGS
Sbjct: 763 HKSSVKSLSNIYLMLLQIYLNPRRTTKNYEKKISNLLSPRNKSIRKVTSKSLSRTMSRGS 822

Query: 121 KKIASIDVAEDIXXXXXXXXXXXXXXXXXEFPEGGTSIMLDEAIDLLSRRWDRINGAQAL 180
           KKIA+I++AED                     E  TSIMLDEA+DLLSRRWDRINGAQAL
Sbjct: 823 KKIAAIEIAEDAKASQSSDSGRSDADTEEFTEEECTSIMLDEALDLLSRRWDRINGAQAL 882

Query: 181 KLLPKETKLQNLLSFLGPLLRKSSEMYRNCSVVQSLR 217
           KLLPKETKLQNLL  LGPL+RKSSEMYRNCSVV+SLR
Sbjct: 883 KLLPKETKLQNLLPILGPLVRKSSEMYRNCSVVRSLR 919


>Medtr5g020140.2 | vam6/Vps39-like protein | HC |
           chr5:7673955-7681747 | 20130731
          Length = 749

 Score =  313 bits (801), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 152/217 (70%), Positives = 176/217 (81%)

Query: 1   MSGYNPEALLKRLPSDALYEERAILLGKMNQHELTLSLYVHKLHVPELALSYCDRVYGST 60
           +SGYNPEALLKRLP DALYEERAILLGKMNQHEL LSLYVHKLHVPELALSYCDRVY S 
Sbjct: 461 ISGYNPEALLKRLPQDALYEERAILLGKMNQHELALSLYVHKLHVPELALSYCDRVYESK 520

Query: 61  HKPSVTSPSNIYLMLLQIYLNPRRTTKNYEKRITNLLSPRSTTLPRANSKILLKTRSRGS 120
           H+PS+ + SNIYL+L+QIYLNPR+TT ++E R+TNLLSP++T + R ++  +     RGS
Sbjct: 521 HQPSLKNSSNIYLLLMQIYLNPRKTTASFEMRLTNLLSPQNTAISRGSAPSVKSKGGRGS 580

Query: 121 KKIASIDVAEDIXXXXXXXXXXXXXXXXXEFPEGGTSIMLDEAIDLLSRRWDRINGAQAL 180
           KKIA I+ AED                  EF EGG++IMLDE +DLLSRRWDRINGAQAL
Sbjct: 581 KKIAEIEGAEDTKVSLSSTDSSKSDGDVDEFNEGGSTIMLDEVLDLLSRRWDRINGAQAL 640

Query: 181 KLLPKETKLQNLLSFLGPLLRKSSEMYRNCSVVQSLR 217
           KLLP+ETKLQ+L SFLGPLLRKSSEMYRNCSV++SLR
Sbjct: 641 KLLPRETKLQDLQSFLGPLLRKSSEMYRNCSVIKSLR 677


>Medtr5g020140.1 | vam6/Vps39-like protein | HC |
           chr5:7674026-7681682 | 20130731
          Length = 899

 Score =  237 bits (604), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 146/193 (75%)

Query: 25  LLGKMNQHELTLSLYVHKLHVPELALSYCDRVYGSTHKPSVTSPSNIYLMLLQIYLNPRR 84
           L+  MN++ ++ +L    LHVPELALSYCDRVY S H+PS+ + SNIYL+L+QIYLNPR+
Sbjct: 635 LMLAMNENAISGNLQNEMLHVPELALSYCDRVYESKHQPSLKNSSNIYLLLMQIYLNPRK 694

Query: 85  TTKNYEKRITNLLSPRSTTLPRANSKILLKTRSRGSKKIASIDVAEDIXXXXXXXXXXXX 144
           TT ++E R+TNLLSP++T + R ++  +     RGSKKIA I+ AED             
Sbjct: 695 TTASFEMRLTNLLSPQNTAISRGSAPSVKSKGGRGSKKIAEIEGAEDTKVSLSSTDSSKS 754

Query: 145 XXXXXEFPEGGTSIMLDEAIDLLSRRWDRINGAQALKLLPKETKLQNLLSFLGPLLRKSS 204
                EF EGG++IMLDE +DLLSRRWDRINGAQALKLLP+ETKLQ+L SFLGPLLRKSS
Sbjct: 755 DGDVDEFNEGGSTIMLDEVLDLLSRRWDRINGAQALKLLPRETKLQDLQSFLGPLLRKSS 814

Query: 205 EMYRNCSVVQSLR 217
           EMYRNCSV++SLR
Sbjct: 815 EMYRNCSVIKSLR 827