Miyakogusa Predicted Gene

Lj0g3v0184509.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0184509.1 Non Characterized Hit- tr|D8TS51|D8TS51_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,39.39,1e-18,DUF3054,Protein of unknown function DUF3054;
seg,NULL,CUFF.11716.1
         (267 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g017450.1 | transmembrane protein, putative | HC | chr1:48...   312   3e-85
Medtr1g017450.2 | transmembrane protein, putative | HC | chr1:48...   295   3e-80

>Medtr1g017450.1 | transmembrane protein, putative | HC |
           chr1:4869439-4866395 | 20130731
          Length = 263

 Score =  312 bits (799), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 179/265 (67%), Positives = 195/265 (73%), Gaps = 12/265 (4%)

Query: 6   QAPCGAMFAKCPSLLSSAKFITAKSSP--FSNPAPKFITRRSPIRPLHLTLAKAEGNLDX 63
           Q P GAMF+      SS KFIT+ S    F+N  PKF T R+ I+PLHLTLAKAEGN+D 
Sbjct: 8   QPPFGAMFSNSSISSSSTKFITSISPQQFFNNQPPKFNTIRTFIKPLHLTLAKAEGNIDS 67

Query: 64  XXXXXXXXXXXXXXXXXXFANDPTVFVGGEDVPLEGVIQFEKPS-SSARIEKWXXXXXXX 122
                             FAND TVFVG +DVPLEGVIQF+KP+ SS+RIEKW       
Sbjct: 68  SSPTKPSSS---------FANDQTVFVGDKDVPLEGVIQFDKPNNSSSRIEKWGRVALFA 118

Query: 123 XXXXXXXXXFATIGRFSHGLSILDLETLRTADPFIAGWFLGAYFLGGFGEDGRGMKGLPK 182
                    F+TIGR+SHGLS+ D ETL TADPFIAGWFLGAYFLGGF EDGRGM GLPK
Sbjct: 119 GGDVLALLLFSTIGRYSHGLSVFDFETLHTADPFIAGWFLGAYFLGGFSEDGRGMNGLPK 178

Query: 183 GVIATAKSWAVGIPIGIGIRAATSGHFPNYGFIFVSLGSTAVLLITFRALLYTILPVDSS 242
           GVIATAKSWA+GIPIGI IRAA SGH PNYGF+ VSLGSTAVLLI  RALLY  LPVD+S
Sbjct: 179 GVIATAKSWAIGIPIGIAIRAAKSGHLPNYGFVLVSLGSTAVLLIAVRALLYAALPVDNS 238

Query: 243 KKSDVYRRGSPFELFELLTSLVRRW 267
           KKSDVYRRGSPFELFELLTSLVRRW
Sbjct: 239 KKSDVYRRGSPFELFELLTSLVRRW 263


>Medtr1g017450.2 | transmembrane protein, putative | HC |
           chr1:4869367-4866502 | 20130731
          Length = 264

 Score =  295 bits (755), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 170/257 (66%), Positives = 187/257 (72%), Gaps = 12/257 (4%)

Query: 6   QAPCGAMFAKCPSLLSSAKFITAKSSP--FSNPAPKFITRRSPIRPLHLTLAKAEGNLDX 63
           Q P GAMF+      SS KFIT+ S    F+N  PKF T R+ I+PLHLTLAKAEGN+D 
Sbjct: 8   QPPFGAMFSNSSISSSSTKFITSISPQQFFNNQPPKFNTIRTFIKPLHLTLAKAEGNIDS 67

Query: 64  XXXXXXXXXXXXXXXXXXFANDPTVFVGGEDVPLEGVIQFEKPS-SSARIEKWXXXXXXX 122
                             FAND TVFVG +DVPLEGVIQF+KP+ SS+RIEKW       
Sbjct: 68  SSPTKPSSS---------FANDQTVFVGDKDVPLEGVIQFDKPNNSSSRIEKWGRVALFA 118

Query: 123 XXXXXXXXXFATIGRFSHGLSILDLETLRTADPFIAGWFLGAYFLGGFGEDGRGMKGLPK 182
                    F+TIGR+SHGLS+ D ETL TADPFIAGWFLGAYFLGGF EDGRGM GLPK
Sbjct: 119 GGDVLALLLFSTIGRYSHGLSVFDFETLHTADPFIAGWFLGAYFLGGFSEDGRGMNGLPK 178

Query: 183 GVIATAKSWAVGIPIGIGIRAATSGHFPNYGFIFVSLGSTAVLLITFRALLYTILPVDSS 242
           GVIATAKSWA+GIPIGI IRAA SGH PNYGF+ VSLGSTAVLLI  RALLY  LPVD+S
Sbjct: 179 GVIATAKSWAIGIPIGIAIRAAKSGHLPNYGFVLVSLGSTAVLLIAVRALLYAALPVDNS 238

Query: 243 KKSDVYRRGSPFELFEL 259
           KKSDVYRRGSPFELFE+
Sbjct: 239 KKSDVYRRGSPFELFEV 255