Miyakogusa Predicted Gene
- Lj0g3v0183689.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0183689.1 tr|A4L9W4|A4L9W4_GOSHI Auxin response factor 3
OS=Gossypium hirsutum GN=ARF3 PE=2 SV=1,42.86,5e-18, ,CUFF.11633.1
(159 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g064430.2 | auxin response factor 1 | HC | chr1:28345468-2... 163 8e-41
Medtr1g064430.1 | auxin response factor 1 | HC | chr1:28345468-2... 162 9e-41
Medtr0041s0110.1 | auxin response factor | LC | scaffold0041:873... 103 7e-23
Medtr7g101280.1 | auxin response factor | LC | chr7:40878955-408... 103 7e-23
Medtr2g094570.1 | auxin response factor 1 | HC | chr2:40353672-4... 84 6e-17
Medtr2g094570.3 | auxin response factor 1 | HC | chr2:40353816-4... 84 7e-17
Medtr2g094570.2 | auxin response factor 1 | HC | chr2:40353799-4... 84 7e-17
Medtr4g058930.2 | auxin response factor, putative | HC | chr4:21... 66 2e-11
Medtr4g058930.1 | auxin response factor, putative | HC | chr4:21... 66 2e-11
>Medtr1g064430.2 | auxin response factor 1 | HC |
chr1:28345468-28349210 | 20130731
Length = 702
Score = 163 bits (412), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 122/214 (57%), Gaps = 61/214 (28%)
Query: 1 MRLSQHPDFPFDGHIPVPTFP---LGPRSPFGCLPESTPAGMQGARHAHYGLTLSDHHHL 57
+RLS H DFP DG I VP+FP LG + F CLPESTPAGMQGARHAHYGL +SD HL
Sbjct: 432 LRLSPHHDFPLDGQISVPSFPSNLLGQSNLFRCLPESTPAGMQGARHAHYGLPISD-LHL 490
Query: 58 NKVHSGLFPAGFPLLNHSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSKKQDD 117
+KV +GLFPAGF +H+A PSVS+ L+ QKS M SENVSCLLSMA ST+S SKK DD
Sbjct: 491 SKVQAGLFPAGFVPFDHAAKLPSVSNNLMMQKSSM-SENVSCLLSMASSTQS--SKKFDD 547
Query: 118 EKRPQLVLFGKTI--------------------------------------SPSSRFGGH 139
EK+PQLVLFG+ I S F H
Sbjct: 548 EKKPQLVLFGQKILTEQQISNDRSSDGNTNKMGNFSDGSGTPHHQQVLQKRSSCESFQWH 607
Query: 140 YE----------------VLMESEDVGQTIDLSL 157
+ V +ESEDVG+TIDLSL
Sbjct: 608 RDNHEETEASLESTDHCKVFLESEDVGRTIDLSL 641
>Medtr1g064430.1 | auxin response factor 1 | HC |
chr1:28345468-28349210 | 20130731
Length = 689
Score = 162 bits (411), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 122/214 (57%), Gaps = 61/214 (28%)
Query: 1 MRLSQHPDFPFDGHIPVPTFP---LGPRSPFGCLPESTPAGMQGARHAHYGLTLSDHHHL 57
+RLS H DFP DG I VP+FP LG + F CLPESTPAGMQGARHAHYGL +SD HL
Sbjct: 419 LRLSPHHDFPLDGQISVPSFPSNLLGQSNLFRCLPESTPAGMQGARHAHYGLPISD-LHL 477
Query: 58 NKVHSGLFPAGFPLLNHSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSKKQDD 117
+KV +GLFPAGF +H+A PSVS+ L+ QKS M SENVSCLLSMA ST+S SKK DD
Sbjct: 478 SKVQAGLFPAGFVPFDHAAKLPSVSNNLMMQKSSM-SENVSCLLSMASSTQS--SKKFDD 534
Query: 118 EKRPQLVLFGKTI--------------------------------------SPSSRFGGH 139
EK+PQLVLFG+ I S F H
Sbjct: 535 EKKPQLVLFGQKILTEQQISNDRSSDGNTNKMGNFSDGSGTPHHQQVLQKRSSCESFQWH 594
Query: 140 YE----------------VLMESEDVGQTIDLSL 157
+ V +ESEDVG+TIDLSL
Sbjct: 595 RDNHEETEASLESTDHCKVFLESEDVGRTIDLSL 628
>Medtr0041s0110.1 | auxin response factor | LC |
scaffold0041:87328-89966 | 20130731
Length = 648
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 83/135 (61%), Gaps = 11/135 (8%)
Query: 1 MRLSQHPDFPFDGHIPVPTFP---LGPRSPFGCLPESTPAGMQGARHAHYGLTLSDHHHL 57
+RL Q PDFP DG P+PTFP L P P LPE++PAGMQGARH H+G+TL D H+L
Sbjct: 426 LRLPQLPDFPIDGQFPMPTFPNNLLSPNIPIFYLPETSPAGMQGARHGHFGVTLPDFHNL 485
Query: 58 NKVHSGLFPAGF--PLLNHSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSKKQ 115
GLF F P N + P +V + QK TSENVSC S+ ST + +S+K
Sbjct: 486 ---PLGLFQPSFQQPFNNIATMPMTVPNNPALQKPN-TSENVSCSHSI--STSAQSSEKP 539
Query: 116 DDEKRPQLVLFGKTI 130
D K QLVLFG+TI
Sbjct: 540 DHAKPHQLVLFGQTI 554
>Medtr7g101280.1 | auxin response factor | LC |
chr7:40878955-40876317 | 20130731
Length = 648
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 83/135 (61%), Gaps = 11/135 (8%)
Query: 1 MRLSQHPDFPFDGHIPVPTFP---LGPRSPFGCLPESTPAGMQGARHAHYGLTLSDHHHL 57
+RL Q PDFP DG P+PTFP L P P LPE++PAGMQGARH H+G+TL D H+L
Sbjct: 426 LRLPQLPDFPIDGQFPMPTFPNNLLSPNIPIFYLPETSPAGMQGARHGHFGVTLPDFHNL 485
Query: 58 NKVHSGLFPAGF--PLLNHSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSKKQ 115
GLF F P N + P +V + QK TSENVSC S+ ST + +S+K
Sbjct: 486 ---PLGLFQPSFQQPFNNIATMPMTVPNNPALQKPN-TSENVSCSHSI--STSAQSSEKP 539
Query: 116 DDEKRPQLVLFGKTI 130
D K QLVLFG+TI
Sbjct: 540 DHAKPHQLVLFGQTI 554
>Medtr2g094570.1 | auxin response factor 1 | HC |
chr2:40353672-40350058 | 20130731
Length = 755
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 96/219 (43%), Gaps = 70/219 (31%)
Query: 1 MRLSQHPDFPFDG-HIPVPTFPLGPRSPFGCLPEST-----PAGMQGARHAHYGLTLSD- 53
+R QHPDFP D +PTF P +P CL S AG+QGARHA G++LSD
Sbjct: 451 LRFPQHPDFPLDVVQFQIPTFSGNPFNPLCCLSSSDNYNAPAAGIQGARHAQIGISLSDL 510
Query: 54 HHHLNKVHSGLFPAGFPLLNHSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSK 113
H + NK G+FP N+ +VS+ + + + E++SCLL++ S K S
Sbjct: 511 HLNNNKFQLGVFP------NNRETISNVSN-ITTNHDNKSKESISCLLTIGNSHKRSLEI 563
Query: 114 KQD-DEKRPQLVLFGK-------------------------------------------- 128
K D ++ R Q +LFG+
Sbjct: 564 KSDNNDNRHQFLLFGQPILTEQQISRKDSSDDVLLSKKKDKEKWFFSDTTQSSISEQFSP 623
Query: 129 ----TISPSSRF-------GGHYEVLMESEDVGQTIDLS 156
T S S+ F GH +V +ESEDVG+T+DLS
Sbjct: 624 AKSSTTSASADFCWQLGLDTGHCKVFLESEDVGRTLDLS 662
>Medtr2g094570.3 | auxin response factor 1 | HC |
chr2:40353816-40349787 | 20130731
Length = 699
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 96/219 (43%), Gaps = 70/219 (31%)
Query: 1 MRLSQHPDFPFDG-HIPVPTFPLGPRSPFGCLPEST-----PAGMQGARHAHYGLTLSD- 53
+R QHPDFP D +PTF P +P CL S AG+QGARHA G++LSD
Sbjct: 395 LRFPQHPDFPLDVVQFQIPTFSGNPFNPLCCLSSSDNYNAPAAGIQGARHAQIGISLSDL 454
Query: 54 HHHLNKVHSGLFPAGFPLLNHSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSK 113
H + NK G+FP N+ +VS+ + + + E++SCLL++ S K S
Sbjct: 455 HLNNNKFQLGVFP------NNRETISNVSN-ITTNHDNKSKESISCLLTIGNSHKRSLEI 507
Query: 114 KQD-DEKRPQLVLFGK-------------------------------------------- 128
K D ++ R Q +LFG+
Sbjct: 508 KSDNNDNRHQFLLFGQPILTEQQISRKDSSDDVLLSKKKDKEKWFFSDTTQSSISEQFSP 567
Query: 129 ----TISPSSRF-------GGHYEVLMESEDVGQTIDLS 156
T S S+ F GH +V +ESEDVG+T+DLS
Sbjct: 568 AKSSTTSASADFCWQLGLDTGHCKVFLESEDVGRTLDLS 606
>Medtr2g094570.2 | auxin response factor 1 | HC |
chr2:40353799-40349787 | 20130731
Length = 663
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 96/219 (43%), Gaps = 70/219 (31%)
Query: 1 MRLSQHPDFPFDG-HIPVPTFPLGPRSPFGCLPEST-----PAGMQGARHAHYGLTLSD- 53
+R QHPDFP D +PTF P +P CL S AG+QGARHA G++LSD
Sbjct: 395 LRFPQHPDFPLDVVQFQIPTFSGNPFNPLCCLSSSDNYNAPAAGIQGARHAQIGISLSDL 454
Query: 54 HHHLNKVHSGLFPAGFPLLNHSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSK 113
H + NK G+FP N+ +VS+ + + + E++SCLL++ S K S
Sbjct: 455 HLNNNKFQLGVFP------NNRETISNVSN-ITTNHDNKSKESISCLLTIGNSHKRSLEI 507
Query: 114 KQD-DEKRPQLVLFGK-------------------------------------------- 128
K D ++ R Q +LFG+
Sbjct: 508 KSDNNDNRHQFLLFGQPILTEQQISRKDSSDDVLLSKKKDKEKWFFSDTTQSSISEQFSP 567
Query: 129 ----TISPSSRF-------GGHYEVLMESEDVGQTIDLS 156
T S S+ F GH +V +ESEDVG+T+DLS
Sbjct: 568 AKSSTTSASADFCWQLGLDTGHCKVFLESEDVGRTLDLS 606
>Medtr4g058930.2 | auxin response factor, putative | HC |
chr4:21714903-21718567 | 20130731
Length = 672
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 54/208 (25%)
Query: 1 MRLSQHPDFPFDGHIPVPTFP---LGPRSPFGCLPESTPAGMQGARHAHYG--LTLSDHH 55
+R + DFP D PTF LGP SPF L ++ PA +QGARHA +G +
Sbjct: 402 LRFPPNLDFPLDVQFLSPTFSGNQLGPNSPFFGLSDNAPACIQGARHAQFGGISLSDLNL 461
Query: 56 HLNKVHSGLFPAGFPLLN-HSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSKK 114
+ NK+ GLFP L+ HS S + + K T E++SCLLS+ S K
Sbjct: 462 NNNKLQLGLFPTNIQHLDVHSRISNSNNMMNNNDK---TKESLSCLLSIGKKYDKSLEKS 518
Query: 115 QDDE---KRPQLVLFGKTI-----------------------------------SPSSRF 136
Q D+ K+ Q LFG+ I S ++ F
Sbjct: 519 QSDDNVVKKHQFCLFGQPILTEQQISRNCSEKNSVDDSKDKEKWFLDAFSAGKGSNAAEF 578
Query: 137 G-------GHYEVLMESEDVGQTIDLSL 157
GH +V +ESEDVG+T+DLSL
Sbjct: 579 SWQLGLDIGHCKVFLESEDVGRTLDLSL 606
>Medtr4g058930.1 | auxin response factor, putative | HC |
chr4:21714903-21719127 | 20130731
Length = 698
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 54/208 (25%)
Query: 1 MRLSQHPDFPFDGHIPVPTFP---LGPRSPFGCLPESTPAGMQGARHAHYG--LTLSDHH 55
+R + DFP D PTF LGP SPF L ++ PA +QGARHA +G +
Sbjct: 402 LRFPPNLDFPLDVQFLSPTFSGNQLGPNSPFFGLSDNAPACIQGARHAQFGGISLSDLNL 461
Query: 56 HLNKVHSGLFPAGFPLLN-HSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSKK 114
+ NK+ GLFP L+ HS S + + K T E++SCLLS+ S K
Sbjct: 462 NNNKLQLGLFPTNIQHLDVHSRISNSNNMMNNNDK---TKESLSCLLSIGKKYDKSLEKS 518
Query: 115 QDDE---KRPQLVLFGKTI-----------------------------------SPSSRF 136
Q D+ K+ Q LFG+ I S ++ F
Sbjct: 519 QSDDNVVKKHQFCLFGQPILTEQQISRNCSEKNSVDDSKDKEKWFLDAFSAGKGSNAAEF 578
Query: 137 G-------GHYEVLMESEDVGQTIDLSL 157
GH +V +ESEDVG+T+DLSL
Sbjct: 579 SWQLGLDIGHCKVFLESEDVGRTLDLSL 606