Miyakogusa Predicted Gene

Lj0g3v0183659.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0183659.1 Non Characterized Hit- tr|I1LEM1|I1LEM1_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,80.65,2e-19,seg,NULL,CUFF.11634.1
         (72 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g105830.1 | RNA polymerase II transcription elongation fac...    72   8e-14

>Medtr8g105830.1 | RNA polymerase II transcription elongation
           factor, putative | HC | chr8:44654061-44650006 |
           20130731
          Length = 325

 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 46/63 (73%), Gaps = 4/63 (6%)

Query: 2   PGESTXXXX--XXXPSGPALDPRSSPVGRAIKPAPVS--RSSFQAVPVEVERIDIGEPEN 57
           PGES+         PSGPALD RSSP+G+ +KPA     RSS QA+PVEVERIDIGEPEN
Sbjct: 118 PGESSAAVAGSVTAPSGPALDLRSSPIGKPVKPASFGSGRSSNQAIPVEVERIDIGEPEN 177

Query: 58  TGM 60
           TG+
Sbjct: 178 TGI 180