Miyakogusa Predicted Gene

Lj0g3v0181949.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0181949.1 Non Characterized Hit- tr|I3SH51|I3SH51_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99,0,no
description,NULL; coiled-coil,NULL; Translational machinery
components,NULL; Ribosomal_L18p,Ribos,CUFF.11613.1
         (302 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g028125.1 | 60S ribosomal protein L5-2 | HC | chr8:1046622...   478   e-135
Medtr3g118030.1 | 60S ribosomal protein L5-2 | HC | chr3:5523393...   462   e-130
Medtr4g016680.1 | ribosomal L18 carboxy-terminal region protein ...   122   3e-28
Medtr2g435940.1 | ribosomal L18 carboxy-terminal region protein ...   101   1e-21

>Medtr8g028125.1 | 60S ribosomal protein L5-2 | HC |
           chr8:10466223-10463273 | 20130731
          Length = 302

 Score =  478 bits (1230), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/289 (80%), Positives = 254/289 (87%)

Query: 3   VFIKAQKPRAYXXXXXXXXXXXXEGKTDYRARIRLINQDKNKYNTAKYRFVVRSTNKDII 62
           V++KAQK +AY            EGKTDYRARIRLINQDKNKYNT KYRFVVR TNKDI+
Sbjct: 2   VYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIV 61

Query: 63  AQIISSTIAGDIVLAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEG 122
           AQI+S++IAGDIVLAAAYSHELP +GL+VGLTNYAAAYCTGLLLARRVLKTLEMDEEYEG
Sbjct: 62  AQIVSASIAGDIVLAAAYSHELPHFGLKVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEG 121

Query: 123 NVEATGEDYSVEPAETRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAG 182
           NVEATGEDYSVEPAE+RRPFRALLDVGL+KTTTGNRVF            IPHSDKRFAG
Sbjct: 122 NVEATGEDYSVEPAESRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181

Query: 183 FDKEKKELDAEVHRKYVFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEELYKK 242
           FDKEKKELDAEVHRKY+FGGHV+AYMKTLIEDEPEKYQ+HFSEYIK+GIEADGLEELYKK
Sbjct: 182 FDKEKKELDAEVHRKYIFGGHVSAYMKTLIEDEPEKYQTHFSEYIKKGIEADGLEELYKK 241

Query: 243 VHAAIRADPTSKKSEKPQPKEHKRDNLKKRTYDERKNKLIARLQALNSA 291
           VHAAIRADPT KKSEK  PK+HKR NLKK TY+ERK KL++RL ALN+A
Sbjct: 242 VHAAIRADPTIKKSEKQPPKQHKRYNLKKLTYEERKAKLVSRLAALNAA 290


>Medtr3g118030.1 | 60S ribosomal protein L5-2 | HC |
           chr3:55233931-55231747 | 20130731
          Length = 300

 Score =  462 bits (1189), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/289 (78%), Positives = 247/289 (85%)

Query: 4   FIKAQKPRAYXXXXXXXXXXXXEGKTDYRARIRLINQDKNKYNTAKYRFVVRSTNKDIIA 63
           F+KAQK  AY            EGKTDYRAR+ LI QD NKY T KYR+VVR TNKDI+ 
Sbjct: 3   FVKAQKSNAYFKRFQVKFKRRREGKTDYRARVSLITQDANKYGTPKYRYVVRLTNKDIVC 62

Query: 64  QIISSTIAGDIVLAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGN 123
           QI+S+TIAGDIVLAAAY+HELP++GL VGLTNYAAAYCTGLLLARRVLKTLEMD+EYEGN
Sbjct: 63  QIVSATIAGDIVLAAAYAHELPQFGLHVGLTNYAAAYCTGLLLARRVLKTLEMDDEYEGN 122

Query: 124 VEATGEDYSVEPAETRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGF 183
           V ATGEDYSVEPA++RRPFRALLDVGL+KTTTGNRVF            IPHSDKRFAGF
Sbjct: 123 VVATGEDYSVEPADSRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182

Query: 184 DKEKKELDAEVHRKYVFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEELYKKV 243
           DKEKKELDAEVHRKY+FGGHVAAYMKTL+EDEPEKYQ+HFSEYIKRGIEADG+EELYKKV
Sbjct: 183 DKEKKELDAEVHRKYIFGGHVAAYMKTLMEDEPEKYQTHFSEYIKRGIEADGIEELYKKV 242

Query: 244 HAAIRADPTSKKSEKPQPKEHKRDNLKKRTYDERKNKLIARLQALNSAA 292
           HAAIRADP+ KK EK  PKEHKR NLKK TY+ERK KL++RLQALNSAA
Sbjct: 243 HAAIRADPSIKKPEKQPPKEHKRYNLKKLTYEERKTKLVSRLQALNSAA 291


>Medtr4g016680.1 | ribosomal L18 carboxy-terminal region protein |
           HC | chr4:5112887-5113668 | 20130731
          Length = 141

 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 89/156 (57%), Gaps = 41/156 (26%)

Query: 128 GEDYSVEPAETRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFDKEK 187
           GEDYSVEP+++RRPF  L++VGL+  TTGN                              
Sbjct: 8   GEDYSVEPSDSRRPFHPLVNVGLVIRTTGN------------------------------ 37

Query: 188 KELDAEVHRKYVFGGHVAAYMKTLI-EDEPEKYQSHFSEYIKRGIEADGLEELYKKVHAA 246
                      VFG    A + TLI +DEP KYQ  FS+ IK+GIEAD  E+LYKKV+ A
Sbjct: 38  ----------CVFGAFKGALVGTLIADDEPAKYQRQFSKRIKKGIEADEFEKLYKKVNDA 87

Query: 247 IRADPTSKKSEKPQPKEHKRDNLKKRTYDERKNKLI 282
           IR DP+ KKS+K  PK+HK  NLKK TY+ERK KLI
Sbjct: 88  IRVDPSIKKSQKHPPKQHKMYNLKKLTYEERKAKLI 123


>Medtr2g435940.1 | ribosomal L18 carboxy-terminal region protein |
           LC | chr2:13922763-13923789 | 20130731
          Length = 103

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/72 (70%), Positives = 57/72 (79%), Gaps = 5/72 (6%)

Query: 179 RFAGFDKEKKELDAEVHRKYVFGGHVAAYMK-----TLIEDEPEKYQSHFSEYIKRGIEA 233
           +F GFDKEKK+LDAE  RK +FGGHVA YMK      L+EDEP+KYQSHFSEYIK GIEA
Sbjct: 24  KFVGFDKEKKKLDAEARRKNIFGGHVAYYMKASGKIVLMEDEPDKYQSHFSEYIKHGIEA 83

Query: 234 DGLEELYKKVHA 245
            G+EE YKKV A
Sbjct: 84  SGIEERYKKVIA 95