Miyakogusa Predicted Gene

Lj0g3v0181719.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0181719.1 Non Characterized Hit- tr|C0HHI9|C0HHI9_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,34.92,1e-18,ZINC FINGER,
CCHC DOMAIN CONTAINING 11,NULL; POLY(A) POLYMERASE CID
(PAP)-RELATED,NULL; no descripti,CUFF.11581.1
         (319 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g068215.2 | poly(A) RNA polymerase GLD2-like protein | HC ...   453   e-127
Medtr3g068215.1 | poly(A) RNA polymerase GLD2-like protein | HC ...   453   e-127
Medtr3g097090.1 | nucleotidyltransferase family protein | HC | c...   135   7e-32
Medtr3g097090.2 | nucleotidyltransferase family protein | HC | c...   105   6e-23
Medtr8g033420.1 | nucleotidyltransferase family protein | HC | c...    93   4e-19
Medtr3g097090.4 | nucleotidyltransferase family protein | HC | c...    80   2e-15
Medtr2g079330.3 | nucleotidyltransferase family protein | HC | c...    53   5e-07
Medtr2g079330.2 | nucleotidyltransferase family protein | HC | c...    52   6e-07
Medtr2g079330.1 | nucleotidyltransferase family protein | HC | c...    52   1e-06

>Medtr3g068215.2 | poly(A) RNA polymerase GLD2-like protein | HC |
           chr3:30854466-30848016 | 20130731
          Length = 479

 Score =  453 bits (1165), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 212/279 (75%), Positives = 244/279 (87%)

Query: 1   MSTRSMLDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGATVEPYGSFVSNL 60
           M++ SML +VL DILR+VTP QEDW IR AIIND RS  ESVESLRGATVEP+GS VSNL
Sbjct: 1   MNSHSMLGVVLTDILRMVTPSQEDWEIRLAIINDLRSAAESVESLRGATVEPFGSVVSNL 60

Query: 61  FTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILIF 120
           FTRWGDLDISI+L NGSHI + G+ QKQ LL + +KAL++KGG++N QFI  ARVPIL F
Sbjct: 61  FTRWGDLDISIQLLNGSHIGAAGRKQKQTLLVNFLKALRMKGGYMNFQFIPKARVPILKF 120

Query: 121 KSRRQGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFN 180
           KS RQG+SCD+SINNL G++KSK LLWI+RIDGRF D+V+VVKEWAKAHKINNSKTG+FN
Sbjct: 121 KSVRQGISCDVSINNLPGLMKSKFLLWINRIDGRFHDLVVVVKEWAKAHKINNSKTGSFN 180

Query: 181 SYSLSLLVIFHFQTCVPAILPPLKDVYPGNMVDKLTGVRADAEDFIAETCNANINRIISD 240
           S++LSLLVIFH QTC PAILPPLKD+YP NMVD+L GVRADAE+ IAETC ANINR IS+
Sbjct: 181 SFTLSLLVIFHLQTCAPAILPPLKDIYPYNMVDELRGVRADAENLIAETCAANINRFISN 240

Query: 241 KSRPINRKSLPELFVEFLRKFAQMDSWASELGICPYTGQ 279
           KSRPINRKSLPELFV+F RKFAQ+D WASE+GIC Y+GQ
Sbjct: 241 KSRPINRKSLPELFVDFQRKFAQIDEWASEIGICTYSGQ 279


>Medtr3g068215.1 | poly(A) RNA polymerase GLD2-like protein | HC |
           chr3:30856016-30848016 | 20130731
          Length = 479

 Score =  453 bits (1165), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 212/279 (75%), Positives = 244/279 (87%)

Query: 1   MSTRSMLDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGATVEPYGSFVSNL 60
           M++ SML +VL DILR+VTP QEDW IR AIIND RS  ESVESLRGATVEP+GS VSNL
Sbjct: 1   MNSHSMLGVVLTDILRMVTPSQEDWEIRLAIINDLRSAAESVESLRGATVEPFGSVVSNL 60

Query: 61  FTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILIF 120
           FTRWGDLDISI+L NGSHI + G+ QKQ LL + +KAL++KGG++N QFI  ARVPIL F
Sbjct: 61  FTRWGDLDISIQLLNGSHIGAAGRKQKQTLLVNFLKALRMKGGYMNFQFIPKARVPILKF 120

Query: 121 KSRRQGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFN 180
           KS RQG+SCD+SINNL G++KSK LLWI+RIDGRF D+V+VVKEWAKAHKINNSKTG+FN
Sbjct: 121 KSVRQGISCDVSINNLPGLMKSKFLLWINRIDGRFHDLVVVVKEWAKAHKINNSKTGSFN 180

Query: 181 SYSLSLLVIFHFQTCVPAILPPLKDVYPGNMVDKLTGVRADAEDFIAETCNANINRIISD 240
           S++LSLLVIFH QTC PAILPPLKD+YP NMVD+L GVRADAE+ IAETC ANINR IS+
Sbjct: 181 SFTLSLLVIFHLQTCAPAILPPLKDIYPYNMVDELRGVRADAENLIAETCAANINRFISN 240

Query: 241 KSRPINRKSLPELFVEFLRKFAQMDSWASELGICPYTGQ 279
           KSRPINRKSLPELFV+F RKFAQ+D WASE+GIC Y+GQ
Sbjct: 241 KSRPINRKSLPELFVDFQRKFAQIDEWASEIGICTYSGQ 279


>Medtr3g097090.1 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 580

 Score =  135 bits (339), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 132/275 (48%), Gaps = 19/275 (6%)

Query: 7   LDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESV--ESLRGATVEPYGSFVSNLFTRW 64
           LD +L D      P    +  R  +I  F  + + +   S+    VE YGSFV ++F   
Sbjct: 46  LDALLCDTYDRDCPKPVHYQNRRDLIRIFNMMAKEIYGNSMVSPVVEEYGSFVMDIFNER 105

Query: 65  GDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILIFKSRR 124
            DLD+SI  S+   I+ + K Q  R     +++ +  G    L+ I  A+VPI+      
Sbjct: 106 SDLDLSINFSDSIEINRMKKIQVLRKFSKKLRSFQKSGHVTALEVILSAKVPIVKVTDIG 165

Query: 125 QGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFNSYSL 184
            GV CD+S+ N  G+ KS  +  I  IDGRF+ + L++K WAKAH IN+SK  T NS S+
Sbjct: 166 TGVECDLSVENRDGIAKSHFIRAISAIDGRFQKLCLLMKSWAKAHNINSSKDATLNSLSI 225

Query: 185 SLLVIFHFQTCVPAILPPLKDVYPGNMVDKLTGVRADAEDFIAETCNANINRIISDKSRP 244
              V FHFQTC P ILPP             + +  +  D  + T          +K   
Sbjct: 226 VSFVAFHFQTCDPPILPP------------FSTLLKEGADLESVTKAVKTYTNYGNK--- 270

Query: 245 INRKSLPELFVEFLRKFAQMDS-WASELGICPYTG 278
            N++SL  LFV  L K A +++ W +      Y G
Sbjct: 271 -NKQSLAHLFVTLLVKLASVENLWQNGYCTSSYNG 304


>Medtr3g097090.2 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 458

 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 92/191 (48%), Gaps = 17/191 (8%)

Query: 89  RLLGDLIKALKLKGGWINLQFISHARVPILIFKSRRQGVSCDISINNLQGVIKSKLLLWI 148
           R     +++ +  G    L+ I  A+VPI+       GV CD+S+ N  G+ KS  +  I
Sbjct: 8   RKFSKKLRSFQKSGHVTALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKSHFIRAI 67

Query: 149 DRIDGRFRDMVLVVKEWAKAHKINNSKTGTFNSYSLSLLVIFHFQTCVPAILPPLKDVYP 208
             IDGRF+ + L++K WAKAH IN+SK  T NS S+   V FHFQTC P ILPP   +  
Sbjct: 68  SAIDGRFQKLCLLMKSWAKAHNINSSKDATLNSLSIVSFVAFHFQTCDPPILPPFSTLL- 126

Query: 209 GNMVDKLTGVRADAEDFIAETCNANINRIISDKSRPINRKSLPELFVEFLRKFAQMDS-W 267
                       +  D  + T          +K    N++SL  LFV  L K A +++ W
Sbjct: 127 -----------KEGADLESVTKAVKTYTNYGNK----NKQSLAHLFVTLLVKLASVENLW 171

Query: 268 ASELGICPYTG 278
            +      Y G
Sbjct: 172 QNGYCTSSYNG 182


>Medtr8g033420.1 | nucleotidyltransferase family protein | HC |
           chr8:12908258-12903936 | 20130731
          Length = 367

 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 8/156 (5%)

Query: 53  YGSFVSNLFTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISH 112
           YGS  S+      D+D+ + + +    + + K++    L D++++  L+    N+Q ++ 
Sbjct: 87  YGSCASSFGVSKSDIDVCLAIQD----ADVDKSKIIMKLADILQSDNLQ----NVQALTR 138

Query: 113 ARVPILIFKSRRQGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKIN 172
           ARVPI+       G+SCDI INNL  V+ +KLL     ID R R +  ++K WAK+  +N
Sbjct: 139 ARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYANIDPRLRQLAFIIKHWAKSRGVN 198

Query: 173 NSKTGTFNSYSLSLLVIFHFQTCVPAILPPLKDVYP 208
            +  GT +SY+  L+ +   Q   PAILP L+ + P
Sbjct: 199 ETYHGTLSSYAYVLMCVHFLQQQRPAILPCLQGMNP 234


>Medtr3g097090.4 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 548

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 110/275 (40%), Gaps = 51/275 (18%)

Query: 7   LDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESV--ESLRGATVEPYGSFVSNLFTRW 64
           LD +L D      P    +  R  +I  F  + + +   S+    VE YGSFV ++F   
Sbjct: 46  LDALLCDTYDRDCPKPVHYQNRRDLIRIFNMMAKEIYGNSMVSPVVEEYGSFVMDIFNER 105

Query: 65  GDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILIFKSRR 124
            DLD+SI  S+   I+ + K Q  R     +++ +  G    L+ I  A+VPI+      
Sbjct: 106 SDLDLSINFSDSIEINRMKKIQVLRKFSKKLRSFQKSGHVTALEVILSAKVPIVKVTDIG 165

Query: 125 QGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFNSYSL 184
            GV CD+S+ N  G+ KS  +  I  IDGRF+ + L+                       
Sbjct: 166 TGVECDLSVENRDGIAKSHFIRAISAIDGRFQKLCLL----------------------- 202

Query: 185 SLLVIFHFQTCVPAILPPLKDVYPGNMVDKLTGVRADAEDFIAETCNANINRIISDKSRP 244
                    TC P ILPP             + +  +  D  + T          +K   
Sbjct: 203 ---------TCDPPILPP------------FSTLLKEGADLESVTKAVKTYTNYGNK--- 238

Query: 245 INRKSLPELFVEFLRKFAQMDS-WASELGICPYTG 278
            N++SL  LFV  L K A +++ W +      Y G
Sbjct: 239 -NKQSLAHLFVTLLVKLASVENLWQNGYCTSSYNG 272


>Medtr2g079330.3 | nucleotidyltransferase family protein | HC |
           chr2:33389842-33395356 | 20130731
          Length = 363

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 20/182 (10%)

Query: 13  DILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGATVEPYGSFVSNLFTRWGDLDISIE 72
           D    ++P  E+ A R A I     +++ +       VE +GSF + L+    D+D+ I 
Sbjct: 123 DFCEFLSPTPEEKAKRDAAIESVFEVIKHI--WPHCQVEVFGSFRTGLYLPTSDIDVVI- 179

Query: 73  LSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILIFKSRRQGVSCDIS 132
           L +G     IG N   R L     A K+       Q I  ARVPI+ F  R+  +S DIS
Sbjct: 180 LKSGLPKPQIGLNAISRSLSQRSMAKKI-------QVIGKARVPIIKFVERKSCLSFDIS 232

Query: 133 INNLQG-----VIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFNSYSLSLL 187
            +   G      I+  +  W        R + L++K + +  ++N   +G   SY+L  +
Sbjct: 233 FDLENGPKAAEYIQDAVAKW-----PPLRPLCLILKVFLQQRELNEVYSGGIGSYALLTM 287

Query: 188 VI 189
           ++
Sbjct: 288 LM 289


>Medtr2g079330.2 | nucleotidyltransferase family protein | HC |
           chr2:33389842-33396770 | 20130731
          Length = 361

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 20/182 (10%)

Query: 13  DILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGATVEPYGSFVSNLFTRWGDLDISIE 72
           D    ++P  E+ A R A I     +++ +       VE +GSF + L+    D+D+ I 
Sbjct: 123 DFCEFLSPTPEEKAKRDAAIESVFEVIKHI--WPHCQVEVFGSFRTGLYLPTSDIDVVI- 179

Query: 73  LSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILIFKSRRQGVSCDIS 132
           L +G     IG N   R L     A K+       Q I  ARVPI+ F  R+  +S DIS
Sbjct: 180 LKSGLPKPQIGLNAISRSLSQRSMAKKI-------QVIGKARVPIIKFVERKSCLSFDIS 232

Query: 133 INNLQG-----VIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFNSYSLSLL 187
            +   G      I+  +  W        R + L++K + +  ++N   +G   SY+L  +
Sbjct: 233 FDLENGPKAAEYIQDAVAKW-----PPLRPLCLILKVFLQQRELNEVYSGGIGSYALLTM 287

Query: 188 VI 189
           ++
Sbjct: 288 LM 289


>Medtr2g079330.1 | nucleotidyltransferase family protein | HC |
           chr2:33389842-33396770 | 20130731
          Length = 514

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 20/182 (10%)

Query: 13  DILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGATVEPYGSFVSNLFTRWGDLDISIE 72
           D    ++P  E+ A R A I     +++ +       VE +GSF + L+    D+D+ I 
Sbjct: 123 DFCEFLSPTPEEKAKRDAAIESVFEVIKHI--WPHCQVEVFGSFRTGLYLPTSDIDVVI- 179

Query: 73  LSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILIFKSRRQGVSCDIS 132
           L +G     IG N   R L     A K+       Q I  ARVPI+ F  R+  +S DIS
Sbjct: 180 LKSGLPKPQIGLNAISRSLSQRSMAKKI-------QVIGKARVPIIKFVERKSCLSFDIS 232

Query: 133 INNLQG-----VIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFNSYSLSLL 187
            +   G      I+  +  W        R + L++K + +  ++N   +G   SY+L  +
Sbjct: 233 FDLENGPKAAEYIQDAVAKWPP-----LRPLCLILKVFLQQRELNEVYSGGIGSYALLTM 287

Query: 188 VI 189
           ++
Sbjct: 288 LM 289