Miyakogusa Predicted Gene

Lj0g3v0181439.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0181439.2 Non Characterized Hit- tr|G7IWJ3|G7IWJ3_MEDTR
tRNA/rRNA methyltransferase, putative OS=Medicago trun,84.91,8e-17,no
description,NULL; SUBFAMILY NOT NAMED,NULL; RNA
METHYLTRANSFERASE,NULL,CUFF.11526.2
         (52 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g027870.1 | tRNA/rRNA methyltransferase SpoU family protei...    91   2e-19
Medtr3g027870.2 | tRNA/rRNA methyltransferase SpoU family protei...    90   4e-19

>Medtr3g027870.1 | tRNA/rRNA methyltransferase SpoU family protein |
           HC | chr3:8786548-8791874 | 20130731
          Length = 278

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/53 (84%), Positives = 46/53 (86%), Gaps = 1/53 (1%)

Query: 1   MVETYVRCLNLSVSVGIALYEASRQLNYEQFQIPSETCIPT-EETLITEDILA 52
           MVETYVRCLNLSVSVGIALYEASRQLNYE  QIPSETCI T EE+ ITEDI  
Sbjct: 226 MVETYVRCLNLSVSVGIALYEASRQLNYESLQIPSETCIDTEEESFITEDIFG 278


>Medtr3g027870.2 | tRNA/rRNA methyltransferase SpoU family protein |
           HC | chr3:8786548-8791778 | 20130731
          Length = 238

 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/53 (84%), Positives = 46/53 (86%), Gaps = 1/53 (1%)

Query: 1   MVETYVRCLNLSVSVGIALYEASRQLNYEQFQIPSETCIPT-EETLITEDILA 52
           MVETYVRCLNLSVSVGIALYEASRQLNYE  QIPSETCI T EE+ ITEDI  
Sbjct: 186 MVETYVRCLNLSVSVGIALYEASRQLNYESLQIPSETCIDTEEESFITEDIFG 238