Miyakogusa Predicted Gene

Lj0g3v0180849.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0180849.1 Non Characterized Hit- tr|F6HI07|F6HI07_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,53.68,5e-16,seg,NULL,CUFF.11485.1
         (158 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g091900.1 | transmembrane protein, putative | HC | chr5:40...   115   1e-26

>Medtr5g091900.1 | transmembrane protein, putative | HC |
           chr5:40105123-40108128 | 20130731
          Length = 232

 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/114 (55%), Positives = 76/114 (66%), Gaps = 4/114 (3%)

Query: 37  MAESTDSNGVYVDHEXXXXXXXXXXXXXXXRRRKHGLVTTETLPEVLNRLVTDILFPGPA 96
           MAE+++SNG    +                 + ++     +TLPEVLNRL + ILFP PA
Sbjct: 1   MAENSNSNG----NSVHVEHEEEEEEETNNLKHRNTKPVKQTLPEVLNRLASTILFPDPA 56

Query: 97  DDASLLRRIKASVAGNAPLLPEASRNSASHVIVWTRRGSPLRALLVISVRIIQF 150
           D  SLLRRIK SVA NAPL+PEASRNSA+ V+VWTRRGSPLRALLVISV  + F
Sbjct: 57  DGTSLLRRIKNSVADNAPLIPEASRNSANDVLVWTRRGSPLRALLVISVGTVAF 110