Miyakogusa Predicted Gene

Lj0g3v0180799.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0180799.1 tr|A7SCA4|A7SCA4_NEMVE Predicted protein
OS=Nematostella vectensis GN=v1g210064 PE=4
SV=1,48,6e-19,NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNIT,NULL;
ETC_C1_NDUFA5,ETC complex I subunit,CUFF.11494.1
         (169 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g053280.1 | NADH-ubiquinone oxidoreductase, putative | HC ...   270   6e-73

>Medtr6g053280.1 | NADH-ubiquinone oxidoreductase, putative | HC |
           chr6:19136919-19141945 | 20130731
          Length = 269

 Score =  270 bits (689), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 126/155 (81%), Positives = 140/155 (90%)

Query: 1   MFLRAVARPLMAKMKETTGIVGLDVVPNAREVLIGLYNKTLTEIQKVPEDEGYRKAVESF 60
           MFLRA+ARPLMA++K TTGIVGLDVVPNAREVLI LY+KTL EI+KVPEDEGYRKAVESF
Sbjct: 87  MFLRAMARPLMARLKTTTGIVGLDVVPNAREVLINLYSKTLNEIKKVPEDEGYRKAVESF 146

Query: 61  TRHRLKACQEEEDWEAIENRLGCGQVEELIEEAQDELKLISHMIEWDPWGVPDDYECEVI 120
           T HRLK CQEEEDWE IENRLGCGQVEELIEEAQDELKLI +MIEWDPWG+PDD+E E++
Sbjct: 147 TSHRLKVCQEEEDWEKIENRLGCGQVEELIEEAQDELKLIGYMIEWDPWGIPDDHEIEMV 206

Query: 121 ENDAPVPKHVPLHRPHPLPKEFHDTLEALISKSGK 155
           ENDAP+PKHVP HRP  LPKEF DTL+AL++   K
Sbjct: 207 ENDAPIPKHVPQHRPPRLPKEFQDTLDALMADPSK 241