Miyakogusa Predicted Gene

Lj0g3v0180459.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0180459.1 Non Characterized Hit- tr|D7TVG5|D7TVG5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,44.44,1e-17,seg,NULL,CUFF.11461.1
         (153 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g099525.1 | PPR superfamily protein | HC | chr8:42014488-4...   120   7e-28

>Medtr8g099525.1 | PPR superfamily protein | HC |
           chr8:42014488-42020624 | 20130731
          Length = 565

 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/152 (52%), Positives = 98/152 (64%), Gaps = 19/152 (12%)

Query: 1   MTLNLSTPFFSSRLLPHPHYSSSSVLTKFSPTCPN-NNAPFPTLSFLAFTLPFPPRPLNT 59
           M LN+STP FS R+LPHP  S      K S T  N NNA +P      F    P + +N 
Sbjct: 1   MILNISTPSFS-RILPHPSSS-----FKLSETYSNRNNASYPV-----FIFTKPLKFINL 49

Query: 60  KXXXXXXXXXXXXDDTVSGSDQFDRQLLQRIAVTAKDADEALQMIADNAAATSEGGVVST 119
           K            ++T + ++  D+QLL R+A TAKDADEALQ+IADN+  ++ GGVVST
Sbjct: 50  KASISESQ-----NETSNSNNLLDQQLLLRVAATAKDADEALQLIADNS--STNGGVVST 102

Query: 120 SDCCSIISAALSRNNPQLALSVFYAMWISFHQ 151
           SDCCSIISAAL RNNPQLALSVFY+M  +FHQ
Sbjct: 103 SDCCSIISAALERNNPQLALSVFYSMRSTFHQ 134