Miyakogusa Predicted Gene

Lj0g3v0180079.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0180079.1 tr|B6T3Q5|B6T3Q5_MAIZE Splicing factor U2af 38
kDa subunit OS=Zea mays PE=2 SV=1,54.5,1e-38,zf-CCCH,Zinc finger,
CCCH-type; ZF_C3H1,Zinc finger, CCCH-type; seg,NULL; U2AUXFACTOR,U2
auxiliary f,CUFF.11429.1
         (153 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g035130.6 | splicing factor U2af small subunit A-like prot...   128   2e-30
Medtr1g035130.3 | splicing factor U2af small subunit A-like prot...   128   2e-30
Medtr1g035130.1 | splicing factor U2af small subunit A-like prot...   128   2e-30
Medtr1g035130.4 | splicing factor U2af small subunit A-like prot...   128   2e-30
Medtr1g035130.2 | splicing factor U2af small subunit A-like prot...   128   2e-30
Medtr1g035130.5 | splicing factor U2af small subunit A-like prot...   128   2e-30
Medtr7g103630.1 | splicing factor U2af small subunit A-like prot...   125   2e-29
Medtr2g084715.2 | splicing factor U2af small subunit A-like prot...   124   4e-29
Medtr2g084715.1 | splicing factor U2af small subunit A-like prot...   124   4e-29
Medtr2g084715.3 | splicing factor U2af small subunit A-like prot...   124   4e-29

>Medtr1g035130.6 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643111-12639099 | 20130731
          Length = 279

 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 64/77 (83%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           MIGNVYV F+EED          GRFY GRPI+A+FSPVTDFREATCRQYEENSCNRGGY
Sbjct: 108 MIGNVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMHVK IGR+LRRKL
Sbjct: 168 CNFMHVKKIGRELRRKL 184


>Medtr1g035130.3 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643111-12639099 | 20130731
          Length = 279

 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 64/77 (83%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           MIGNVYV F+EED          GRFY GRPI+A+FSPVTDFREATCRQYEENSCNRGGY
Sbjct: 108 MIGNVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMHVK IGR+LRRKL
Sbjct: 168 CNFMHVKKIGRELRRKL 184


>Medtr1g035130.1 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643125-12639099 | 20130731
          Length = 279

 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 64/77 (83%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           MIGNVYV F+EED          GRFY GRPI+A+FSPVTDFREATCRQYEENSCNRGGY
Sbjct: 108 MIGNVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMHVK IGR+LRRKL
Sbjct: 168 CNFMHVKKIGRELRRKL 184


>Medtr1g035130.4 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12639099 | 20130731
          Length = 279

 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 64/77 (83%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           MIGNVYV F+EED          GRFY GRPI+A+FSPVTDFREATCRQYEENSCNRGGY
Sbjct: 108 MIGNVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMHVK IGR+LRRKL
Sbjct: 168 CNFMHVKKIGRELRRKL 184


>Medtr1g035130.2 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12639591 | 20130731
          Length = 279

 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 64/77 (83%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           MIGNVYV F+EED          GRFY GRPI+A+FSPVTDFREATCRQYEENSCNRGGY
Sbjct: 108 MIGNVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMHVK IGR+LRRKL
Sbjct: 168 CNFMHVKKIGRELRRKL 184


>Medtr1g035130.5 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12641860 | 20130731
          Length = 279

 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 64/77 (83%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           MIGNVYV F+EED          GRFY GRPI+A+FSPVTDFREATCRQYEENSCNRGGY
Sbjct: 108 MIGNVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMHVK IGR+LRRKL
Sbjct: 168 CNFMHVKKIGRELRRKL 184


>Medtr7g103630.1 | splicing factor U2af small subunit A-like protein
           | HC | chr7:41947426-41950345 | 20130731
          Length = 327

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 63/77 (81%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           M+GNVYVQ++EED          GRFYSGRPII +FSPVTDFREATCRQYEEN CNRGGY
Sbjct: 122 MVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGY 181

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMH+K I RDLR++L
Sbjct: 182 CNFMHLKKISRDLRKRL 198


>Medtr2g084715.2 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927010-35930737 | 20130731
          Length = 324

 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 64/77 (83%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           M+GNVYVQFREE+          GRFY+GRPII +FSPVTDFREATCRQYEEN+CNRGGY
Sbjct: 108 MVGNVYVQFREEEHAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMH+K I R+LRR+L
Sbjct: 168 CNFMHLKRISRELRRQL 184


>Medtr2g084715.1 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927030-35929938 | 20130731
          Length = 324

 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 64/77 (83%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           M+GNVYVQFREE+          GRFY+GRPII +FSPVTDFREATCRQYEEN+CNRGGY
Sbjct: 108 MVGNVYVQFREEEHAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMH+K I R+LRR+L
Sbjct: 168 CNFMHLKRISRELRRQL 184


>Medtr2g084715.3 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927030-35930729 | 20130731
          Length = 324

 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 64/77 (83%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           M+GNVYVQFREE+          GRFY+GRPII +FSPVTDFREATCRQYEEN+CNRGGY
Sbjct: 108 MVGNVYVQFREEEHAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMH+K I R+LRR+L
Sbjct: 168 CNFMHLKRISRELRRQL 184