Miyakogusa Predicted Gene

Lj0g3v0178939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0178939.1 tr|A9SJQ1|A9SJQ1_PHYPA Class II RPD3 type histone
deacetylase protein OS=Physcomitrella patens subsp,55,1e-18,no
description,Histone deacetylase domain; SUBFAMILY NOT NAMED,NULL;
HISTONE DEACETYLASE,Histone
dea,NODE_39709_length_327_cov_88.611618.path3.1
         (126 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g093800.1 | histone deacetylase superfamily protein | HC |...   155   1e-38

>Medtr8g093800.1 | histone deacetylase superfamily protein | HC |
           chr8:39251957-39246652 | 20130731
          Length = 420

 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 102/131 (77%), Gaps = 6/131 (4%)

Query: 2   LLHNLPRSP--ASGSVSFLVGNGFFCRKSQR--VVNRC--SFRISNSSLPSIEQLSDARV 55
           L + LPRSP  +SG   FL+ +     K+ R  VV +C  +    +S +PSI+QLS AR+
Sbjct: 3   LPYYLPRSPPSSSGKSIFLLNHHVNKWKNHRHKVVKKCLGASIYCSSDVPSIQQLSHARL 62

Query: 56  IYSVAPSMGHNQDSHPESHFRVPSIVNALEEMKLTPKFRGSEIIELQHFEPASVDDIASV 115
           IYSVAPSMGHNQ+SHPESHFRVP+IV AL++MKLT KFRGSE+IELQ+FEPAS DDIASV
Sbjct: 63  IYSVAPSMGHNQESHPESHFRVPAIVTALQQMKLTSKFRGSEVIELQNFEPASTDDIASV 122

Query: 116 HARAYVFGLEK 126
           HARAYV GLEK
Sbjct: 123 HARAYVSGLEK 133