Miyakogusa Predicted Gene
- Lj0g3v0177449.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0177449.1 tr|A9RIS8|A9RIS8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_114815,33.08,0.00003, ,CUFF.11206.1
(213 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g034935.1 | F-box protein | HC | chr6:12225876-12224238 | ... 344 4e-95
Medtr6g049050.1 | F-box protein | HC | chr6:17774212-17775602 | ... 299 2e-81
Medtr7g017400.1 | F-box/kelch-repeat plant protein | HC | chr7:5... 50 2e-06
>Medtr6g034935.1 | F-box protein | HC | chr6:12225876-12224238 |
20130731
Length = 390
Score = 344 bits (882), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 165/215 (76%), Positives = 188/215 (87%), Gaps = 3/215 (1%)
Query: 1 MVLTELAALYYSAVSDTDNSN--NRWMKFSSNLPSKPRSPVLVGDSAFALCEVGSPWRSQ 58
MVLTELAA Y++ +D+++ + W KFSSNLPSKPRSPVL+ D A+ALCEVGSPWRSQ
Sbjct: 177 MVLTELAAFYFAGHGSSDDNDKISSWQKFSSNLPSKPRSPVLIEDWAYALCEVGSPWRSQ 236
Query: 59 WKLFTCRVAPALAKKAGSRLERNEWGDVFDILKRPRLVRGAGDRVLMVGGLKSSFSLNAP 118
WKLF+C + + K SR+ER EWGDVFDILKRPRLVRG G+R+LM+GGLKSSFSLN+P
Sbjct: 237 WKLFSCCFSATTSGK-WSRIERQEWGDVFDILKRPRLVRGVGNRILMIGGLKSSFSLNSP 295
Query: 119 CSTILILRLDLGTLEWDDAGRMPPEMFRCFQEAGKFKVFGAGDRVCFSAKRIGKLALWDR 178
CSTILILRLDLG +EWD+AGRMP EMF+CFQEAGKFKVFGAGDRVCFSAKR+GKLALWDR
Sbjct: 296 CSTILILRLDLGMMEWDEAGRMPVEMFKCFQEAGKFKVFGAGDRVCFSAKRVGKLALWDR 355
Query: 179 NADQGAEWRWIDNVPGNGDGLYRGFVFEGRLDALP 213
++G EW WIDNVPGNGDGLYRGFVFEGRLDALP
Sbjct: 356 GREKGDEWSWIDNVPGNGDGLYRGFVFEGRLDALP 390
>Medtr6g049050.1 | F-box protein | HC | chr6:17774212-17775602 |
20130731
Length = 365
Score = 299 bits (765), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 141/213 (66%), Positives = 171/213 (80%), Gaps = 2/213 (0%)
Query: 1 MVLTELAALYYSAVSDTDNSNNRWMKFSSNLPSKPRSPVLVGDSAFALCEVGSPWRSQWK 60
M+LTE A Y+S D+++S + W K SSNLPSKPRSP+L+ DSA+ LC VGS RS+WK
Sbjct: 155 MILTEFAIYYFSG--DSNDSTHGWQKLSSNLPSKPRSPILIEDSAYVLCNVGSRQRSEWK 212
Query: 61 LFTCRVAPALAKKAGSRLERNEWGDVFDILKRPRLVRGAGDRVLMVGGLKSSFSLNAPCS 120
LF+C V A++ SRL R E G VFDILKRP++VRG G+++L++G LKS+F LN PCS
Sbjct: 213 LFSCCVTSAISHVTWSRLTRPECGVVFDILKRPQIVRGVGNKILIIGSLKSTFKLNPPCS 272
Query: 121 TILILRLDLGTLEWDDAGRMPPEMFRCFQEAGKFKVFGAGDRVCFSAKRIGKLALWDRNA 180
TILILRLDLGT+EW++ GRMP EMF FQ+AG+FKVFG GDRV F AKRIGKLALWDR+
Sbjct: 273 TILILRLDLGTMEWEEVGRMPIEMFSYFQDAGEFKVFGGGDRVFFPAKRIGKLALWDRSD 332
Query: 181 DQGAEWRWIDNVPGNGDGLYRGFVFEGRLDALP 213
+G EWRWIDN+PG GDGLYRGFVFEGR +ALP
Sbjct: 333 SKGDEWRWIDNIPGKGDGLYRGFVFEGRFNALP 365
>Medtr7g017400.1 | F-box/kelch-repeat plant protein | HC |
chr7:5537668-5535525 | 20130731
Length = 438
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 22/145 (15%)
Query: 77 RLERNEWGDVFDILKRPR------LVRGAGDRVLMVGGLKSSFSLNAPCSTILILRLDLG 130
RL+ N W + K PR LV G R+ +VG + L + +I I LD
Sbjct: 303 RLDINRWEHI--PAKFPRSLLDGYLVAGTQKRLFLVGRI----GLYSTLQSIRIWELDHA 356
Query: 131 TLEWDDAGRMPPEMFRCF--QEAGKFKVFGAGDRVCFSAKRIGKLALWDRNADQGAEWRW 188
+ W + RMPP FR A +F+ FG + +CF++ GK L+D + W W
Sbjct: 357 KILWGEISRMPPRYFRSLLRLSAERFECFGLDNLICFTSYNQGKGLLFDVDKKI---WSW 413
Query: 189 IDNVPGNGDGLY--RGFVFEGRLDA 211
I G+ Y + +E R DA
Sbjct: 414 IG---GSAFQSYNNQACFYEPRFDA 435