Miyakogusa Predicted Gene

Lj0g3v0176109.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0176109.1 Non Characterized Hit- tr|K4BF75|K4BF75_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,33.12,0.000000003,seg,NULL,CUFF.11097.1
         (140 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0020s0020.1 | heat shock transcription factor B2A | HC | sc...   120   3e-28
Medtr1g100777.1 | heat shock transcription factor B2A | HC | chr...    64   7e-11

>Medtr0020s0020.1 | heat shock transcription factor B2A | HC |
           scaffold0020:8585-11218 | 20130731
          Length = 341

 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/140 (55%), Positives = 87/140 (62%), Gaps = 20/140 (14%)

Query: 1   MRLLCNNIYSLMSSYASGGGNNQQADVGSSGGCAQGSRESVLAGVGP---LDLMPP-ATE 56
           MRLLCNNIYSLMS++A+   NN Q D     G AQGSRES +  V P   LDLMP  A  
Sbjct: 214 MRLLCNNIYSLMSNFAN---NNSQTD-----GGAQGSRESGMTAVNPKPPLDLMPAVANR 265

Query: 57  TAPVEMNPKLFGVAIGAKRARENXXXXXXXXXXXXXXEDDTLLRMHQPPPAEVKSEPSDC 116
           ++  EMNPKLFGVAIGAKR REN              EDDTLLR+HQP   +VKSEP DC
Sbjct: 266 SSGEEMNPKLFGVAIGAKRVRENGCENGEK-------EDDTLLRLHQPGSTDVKSEPLDC 318

Query: 117 QNHLENQQTPWLNLCRTTNQ 136
            +   N +T WLN  R  NQ
Sbjct: 319 SDG-GNDRTAWLNQSRRKNQ 337


>Medtr1g100777.1 | heat shock transcription factor B2A | HC |
           chr1:45704359-45705846 | 20130731
          Length = 303

 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 71/146 (48%), Gaps = 29/146 (19%)

Query: 1   MRLLCNNIYSLMSSYASGGGNNQQADVGSSG--GCAQGSRESVLAGVGPLDLMPPAT--- 55
           M+ L +NI++L+S+Y      N Q + G+ G   C+  S       V  L L+P      
Sbjct: 181 MKSLYSNIFNLLSNYV-----NSQTEGGAEGKESCSTAS------PVKTLRLLPEKRCNG 229

Query: 56  ETAPVE-MNPKLFGVAIGAKRARENXXXXXXXXXXXXXXEDDTLLRMHQPPPAEVKSEPS 114
           E A VE  NPKLFG+AI AKR RE               EDD +L ++     ++KSEP 
Sbjct: 230 EDAAVEDRNPKLFGIAIDAKREREG-----------RCIEDDVVLSLNHSVHVDLKSEPF 278

Query: 115 DCQNHLENQQTPWLNLCRTTNQRVCN 140
           D +   E ++   LN C   NQ VCN
Sbjct: 279 DSRKG-EKRKMMRLNQCYRANQSVCN 303