Miyakogusa Predicted Gene

Lj0g3v0175929.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0175929.1 Non Characterized Hit- tr|B9FDC4|B9FDC4_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,54.29,0.000000000000001,UNCHARACTERIZED,NULL; CTL
TRANSPORTER,Choline transporter-like,CUFF.11080.1
         (208 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g059125.1 | plasma-membrane choline transporter family pro...   348   2e-96
Medtr2g079490.1 | plasma-membrane choline transporter family pro...   339   8e-94

>Medtr8g059125.1 | plasma-membrane choline transporter family
           protein | HC | chr8:20671850-20679163 | 20130731
          Length = 701

 Score =  348 bits (893), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 159/211 (75%), Positives = 183/211 (86%), Gaps = 3/211 (1%)

Query: 1   MRGPLGAVVGRYPSSDGTTHLGG-IIRHSRKCRDILVLVIFIAFWISMIVNSSFAFNKGN 59
           MRGPLGAV+G Y SSDG T +GG II+H+RKCRDI  LV FIAFWI+MIVNSSF FN+GN
Sbjct: 1   MRGPLGAVIGSYTSSDGVTQMGGGIIKHNRKCRDITALVFFIAFWIAMIVNSSFGFNQGN 60

Query: 60  PLMLTFVLDYNGNVCGDQHE--GLHELELKYWLNPYQVYQSGLKDSEFKLANARSICLLD 117
           PL LT+ LDY GNVCGD+H   GL ELE++YW NP QVYQ+GLKDS+FKL NARSICL +
Sbjct: 61  PLRLTYGLDYKGNVCGDKHAHPGLGELEIRYWQNPNQVYQTGLKDSQFKLVNARSICLSE 120

Query: 118 CPNPPDDSLSWVCDYPEGDIRVSMNDWIDMNYDYYEFLTPEMKNSSLQLQGPCYPVIFPS 177
           CP P DDSL WVCDYPEGDIR+SM DWI  +YDYY+FLTP+M+NSSLQLQGPCYPVIFPS
Sbjct: 121 CPIPADDSLKWVCDYPEGDIRLSMEDWIKSDYDYYQFLTPDMRNSSLQLQGPCYPVIFPS 180

Query: 178 INVYWSCQFIARASNSSLTHWQKLGGVNINE 208
           +NVYWSCQFIAR SN+SL HW+++GGV+INE
Sbjct: 181 VNVYWSCQFIARPSNTSLKHWEQMGGVSINE 211


>Medtr2g079490.1 | plasma-membrane choline transporter family
           protein | HC | chr2:33455204-33461876 | 20130731
          Length = 688

 Score =  339 bits (870), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 156/196 (79%), Positives = 177/196 (90%), Gaps = 2/196 (1%)

Query: 15  SDGTTHLGG--IIRHSRKCRDILVLVIFIAFWISMIVNSSFAFNKGNPLMLTFVLDYNGN 72
           S GT H+GG  II+H+RKCRDI+VLVIFIAFWI+MIVNSSFAFN+GNP  LTF LDY GN
Sbjct: 4   SSGTIHMGGNGIIKHNRKCRDIVVLVIFIAFWIAMIVNSSFAFNRGNPFRLTFGLDYKGN 63

Query: 73  VCGDQHEGLHELELKYWLNPYQVYQSGLKDSEFKLANARSICLLDCPNPPDDSLSWVCDY 132
           VCGD+H GLH+LELKYWLNP QVYQSGLKDS+ KL +ARSICLLDCP P +DSL WVCDY
Sbjct: 64  VCGDKHAGLHQLELKYWLNPNQVYQSGLKDSQLKLGDARSICLLDCPVPREDSLVWVCDY 123

Query: 133 PEGDIRVSMNDWIDMNYDYYEFLTPEMKNSSLQLQGPCYPVIFPSINVYWSCQFIARASN 192
           PEGDI VSM+DWIDMNY+YY FLTPEM+NSSLQLQGPCYPVIFPS+NV+WSCQFIARASN
Sbjct: 124 PEGDIVVSMDDWIDMNYNYYAFLTPEMRNSSLQLQGPCYPVIFPSVNVHWSCQFIARASN 183

Query: 193 SSLTHWQKLGGVNINE 208
            SL+ WQ++GGV+IN+
Sbjct: 184 VSLSLWQQMGGVSINK 199