Miyakogusa Predicted Gene

Lj0g3v0175829.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0175829.1 Non Characterized Hit- tr|I3S8F3|I3S8F3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.24,0,seg,NULL,CUFF.11089.1
         (567 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g081050.1 | AP-5 complex subunit zeta-like protein | HC | ...   927   0.0  

>Medtr4g081050.1 | AP-5 complex subunit zeta-like protein | HC |
           chr4:31338825-31349491 | 20130731
          Length = 568

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/565 (81%), Positives = 489/565 (86%), Gaps = 1/565 (0%)

Query: 4   EDDRGWDFHLRTLSISARDSNTANDPASDPSLLQSVKKLHGLCKAENSEDLVARVYPQIN 63
           E D GWDFHLRTLSISARDSNTANDPASDPSLL SVKKLH LCK EN+EDLVARVYPQIN
Sbjct: 3   ERDTGWDFHLRTLSISARDSNTANDPASDPSLLHSVKKLHELCKTENNEDLVARVYPQIN 62

Query: 64  KIFQRAVASLSQSQTSNGLLLLAILQFYLDFGDVVLHDADPSLRTFFRSCLSREFADPVV 123
           KIFQRAVASLS SQTSNGLLLLAILQFYLDFG+VVLHDADPSLRTFFRSCLSREFADPVV
Sbjct: 63  KIFQRAVASLSLSQTSNGLLLLAILQFYLDFGEVVLHDADPSLRTFFRSCLSREFADPVV 122

Query: 124 AEAMLEFLITNKKKLLTSXXXXXXXXXXXXXKMIAWNGERLEKLFMKAFPGLISPGSFIP 183
           AEAM+EFLI NKK++LTS             K+IAWNGERLEK  +KAFPGL+SPGSFIP
Sbjct: 123 AEAMIEFLIINKKRILTSFPNLMPQFFPLLLKLIAWNGERLEKQILKAFPGLMSPGSFIP 182

Query: 184 LFPYLLDLPILAVALEKVEKSSGPLIGSSIASIQKNTAPKMLLALMDEAYTGSTIXXXXX 243
           LFP LLDLPIL VALEKVEKSSGPLIGSSIASIQKNTAPKMLLALMDEAYTGSTI     
Sbjct: 183 LFPSLLDLPILVVALEKVEKSSGPLIGSSIASIQKNTAPKMLLALMDEAYTGSTIEDGGG 242

Query: 244 XXXXXXXXAIDVSDPIFLELLKDENDGIAERPWSSPMMTTILQAAVNSPYSDRLKSVLSM 303
                   AIDV+DP+FLE+LKDENDGIAERPWSSP+MTTILQ A ++PYSDRLK+VL +
Sbjct: 243 DFESEDSSAIDVTDPLFLEILKDENDGIAERPWSSPVMTTILQTAASNPYSDRLKAVLHL 302

Query: 304 APHLLDVYFSIALHDVNDSLICALIPLLMSRYSTIFPDKIFSYEVRKRLLEFMLSSFQRS 363
            P LLDVYFSIAL DVNDSLICAL+PLLMSR++TIFPDK+FSYEV KRLLEF+LS+FQR 
Sbjct: 303 TPRLLDVYFSIALRDVNDSLICALLPLLMSRFATIFPDKVFSYEVHKRLLEFILSTFQRY 362

Query: 364 PKFIAILKKPIMDRLGE-YDSPDKTELALQLCWAIGEHXXXXXSHKDEARXXXXXXXXXX 422
           P FIA+LKKPIM RLGE YDSPDKTELALQLCWAIGEH     SHKDEAR          
Sbjct: 363 PNFIALLKKPIMARLGEAYDSPDKTELALQLCWAIGEHGGGGGSHKDEARELFESLELLL 422

Query: 423 XXXXXXXXXGMTLEVFLSSDKDTYRRSSQSRLLCFVVTAIAKLATHHRELLPRARVALGK 482
                    GM  EV LSSDKDTYRRSSQSRL+CFVVTAIAKLATHHRELLPRARV+LGK
Sbjct: 423 YENLSSSRLGMAQEVSLSSDKDTYRRSSQSRLMCFVVTAIAKLATHHRELLPRARVSLGK 482

Query: 483 VARSRISDIRVWRRACDYLGLMKDPAICSSILGPSRSSQGTTQKIGSMNWSEGATKMIAH 542
           VARSRISD+RVWRRACD+LGLMKDPAICSSILGPSRS+QGTTQKIGS+NW+EGATKM AH
Sbjct: 483 VARSRISDMRVWRRACDFLGLMKDPAICSSILGPSRSAQGTTQKIGSINWNEGATKMTAH 542

Query: 543 IPFYILGEQEGPPFHDFSFSDILSR 567
           IPFYILGEQEGPPFHDFSFSDILSR
Sbjct: 543 IPFYILGEQEGPPFHDFSFSDILSR 567