Miyakogusa Predicted Gene

Lj0g3v0175809.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0175809.1 Non Characterized Hit- tr|I3SFR5|I3SFR5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.44,0,ETF_ALPHA,Electron transfer flavoprotein, alpha subunit,
C-terminal, conserved site; DHS-like NAD/FA,CUFF.11074.1
         (360 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g080790.1 | electron transfer flavoprotein subunit alpha |...   536   e-152
Medtr4g080790.2 | electron transfer flavoprotein subunit alpha |...   383   e-106

>Medtr4g080790.1 | electron transfer flavoprotein subunit alpha | HC
           | chr4:31381421-31375639 | 20130731
          Length = 357

 Score =  536 bits (1380), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 266/333 (79%), Positives = 287/333 (86%), Gaps = 1/333 (0%)

Query: 29  TRLGSTLVVAEHDGGAIRAPSLSALTATTCLPDXXXXXXXXXXXXXX-XXHQAASHAASC 87
           +R GSTLV+AEH+ GAI+ PSLSAL A TCLP+                 HQAASHAAS 
Sbjct: 25  SRNGSTLVLAEHENGAIKPPSLSALHAATCLPNNDDSSVSLLLAGSGPSLHQAASHAASS 84

Query: 88  HPSISQVLVADSDTFKSPLAEPWAKLVHMVQQRGGYSHIIAASSSFGKNVMPRAAALLDV 147
           HPSIS+VLVADSDTFK+ LAEPWAKLVH+VQQR GYSHIIAAS+SFGKNVMPRAAALLDV
Sbjct: 85  HPSISKVLVADSDTFKNQLAEPWAKLVHLVQQRDGYSHIIAASNSFGKNVMPRAAALLDV 144

Query: 148 SPVTDVTGISDSHTFVRPIYAGNALCTVRYTGAGPCILTIRATSFPAPQKSVDSKSNEAS 207
           SPVTDVTGISDSHTF+RPIYAGNALCTVRYTGA PCILTIR+TSFP   KSVDSKS++AS
Sbjct: 145 SPVTDVTGISDSHTFIRPIYAGNALCTVRYTGASPCILTIRSTSFPVSHKSVDSKSDKAS 204

Query: 208 ISQVDLSTFDEDLGKSRYISQTTQEDERPDLGNARIVVSGGRALKNAENFKLIENLAEKL 267
           ISQVDLSTFDEDL KSRYISQT+++DE PDLGNARIVV+GGRALK+AENFKLIENLA+KL
Sbjct: 205 ISQVDLSTFDEDLDKSRYISQTSRDDEGPDLGNARIVVTGGRALKSAENFKLIENLAKKL 264

Query: 268 XXXXXXXXXXXXXXFVPNELQVGQTGKIVAPELYMAFGVSGAIQHIAGMRDSKVIVAVNN 327
                         FV N+LQVGQTGKIVAPELYMAFGVSGAIQHIAGMRDSKVIVAVNN
Sbjct: 265 GAAVGATRAAVDAGFVANDLQVGQTGKIVAPELYMAFGVSGAIQHIAGMRDSKVIVAVNN 324

Query: 328 DADAPIFQVADYGLVGDLFEVIPELLEKLPEKK 360
           DADAPIFQVADYGLVGDLFEV+PELLEKLPEKK
Sbjct: 325 DADAPIFQVADYGLVGDLFEVLPELLEKLPEKK 357


>Medtr4g080790.2 | electron transfer flavoprotein subunit alpha | HC
           | chr4:31381382-31375639 | 20130731
          Length = 294

 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/240 (79%), Positives = 209/240 (87%), Gaps = 1/240 (0%)

Query: 29  TRLGSTLVVAEHDGGAIRAPSLSALTATTCLPDXXXXXXXXXXXXXX-XXHQAASHAASC 87
           +R GSTLV+AEH+ GAI+ PSLSAL A TCLP+                 HQAASHAAS 
Sbjct: 25  SRNGSTLVLAEHENGAIKPPSLSALHAATCLPNNDDSSVSLLLAGSGPSLHQAASHAASS 84

Query: 88  HPSISQVLVADSDTFKSPLAEPWAKLVHMVQQRGGYSHIIAASSSFGKNVMPRAAALLDV 147
           HPSIS+VLVADSDTFK+ LAEPWAKLVH+VQQR GYSHIIAAS+SFGKNVMPRAAALLDV
Sbjct: 85  HPSISKVLVADSDTFKNQLAEPWAKLVHLVQQRDGYSHIIAASNSFGKNVMPRAAALLDV 144

Query: 148 SPVTDVTGISDSHTFVRPIYAGNALCTVRYTGAGPCILTIRATSFPAPQKSVDSKSNEAS 207
           SPVTDVTGISDSHTF+RPIYAGNALCTVRYTGA PCILTIR+TSFP   KSVDSKS++AS
Sbjct: 145 SPVTDVTGISDSHTFIRPIYAGNALCTVRYTGASPCILTIRSTSFPVSHKSVDSKSDKAS 204

Query: 208 ISQVDLSTFDEDLGKSRYISQTTQEDERPDLGNARIVVSGGRALKNAENFKLIENLAEKL 267
           ISQVDLSTFDEDL KSRYISQT+++DE PDLGNARIVV+GGRALK+AENFKLIENLA+KL
Sbjct: 205 ISQVDLSTFDEDLDKSRYISQTSRDDEGPDLGNARIVVTGGRALKSAENFKLIENLAKKL 264