Miyakogusa Predicted Gene

Lj0g3v0174419.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0174419.1 CUFF.10957.1
         (502 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108010.1 | SPOC domain/transcription elongation factor S-...   107   4e-23
Medtr6g033205.1 | hypothetical protein | LC | chr6:10505567-1050...   103   3e-22
Medtr1g063780.1 | SPOC domain/transcription elongation factor S-...    78   2e-14

>Medtr3g108010.1 | SPOC domain/transcription elongation factor S-II,
           putative | HC | chr3:49909087-49915326 | 20130731
          Length = 1132

 Score =  107 bits (266), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 86/154 (55%), Gaps = 1/154 (0%)

Query: 95  EKLWDGYLKLNPSTTVSAIVFYNSGEKMPDIKWSEFVEVKGRVKLVDFENYVRDVCRSPN 154
           E LW+G L+ N STT S I  + SGEK     W  F+E+KGRV+L  FE ++R++ +S +
Sbjct: 733 ECLWEGMLQPNISTTDSVISIFKSGEKTSTKDWPGFLEIKGRVRLDAFEKFLRELPQSRS 792

Query: 155 RGLMVVSLRWKEGSSKYGPTDMKTVAEKYKESERVGLAKLLPGIDLYICPRSDKIITLLA 214
           R +MV     K G +      ++ VA+ Y   ERVG A+ + G++LY CP   K + +L+
Sbjct: 793 RAIMVSHFISK-GITPEEQATLREVADSYILDERVGFAEPVHGVELYFCPPHKKTVEMLS 851

Query: 215 KHGSYNGKRAVKVNKDSLIGCVVWKKNQVNPSSS 248
           K        AV    + LIG +VW+K  +  S S
Sbjct: 852 KILPKEQIEAVNSIDNGLIGIIVWRKTNITTSIS 885


>Medtr6g033205.1 | hypothetical protein | LC |
           chr6:10505567-10506875 | 20130731
          Length = 352

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 63/83 (75%), Gaps = 4/83 (4%)

Query: 162 LRWKEGSSKYGPTDMKTVAEKYKESERVGLAKLLPGIDLYICPRSDKIITLLAKHGSYNG 221
           + WKEGS+K+    M+ VA+KY+E+  VG+A+++ GIDLY+CPRSD IIT+LAK+G    
Sbjct: 1   MHWKEGSTKHEMEGMQKVAKKYEENGTVGIAEVITGIDLYVCPRSDTIITILAKYGG--- 57

Query: 222 KRAVKVNKDSLIGCVVWKKNQVN 244
                 NKDSLIGCVVW+KNQ+N
Sbjct: 58  -ETFTENKDSLIGCVVWRKNQIN 79


>Medtr1g063780.1 | SPOC domain/transcription elongation factor S-II
           | LC | chr1:28001762-28001111 | 20130731
          Length = 73

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 88  AQKVAPVEKLWDGYLKLNPSTTVSAIVFYNSGEKMPDIKWSEFVEVKGRVKLVDFENYVR 147
           A+  +  +KLWDGYL+LN   TVS I F+ S EKM + KWS++VEVKGRVKL +FE Y++
Sbjct: 7   AKTTSANKKLWDGYLRLNSVLTVSTIAFFQSAEKMSN-KWSKYVEVKGRVKLHNFEKYIQ 65

Query: 148 DVCRS 152
           ++ RS
Sbjct: 66  ELPRS 70