Miyakogusa Predicted Gene
- Lj0g3v0173989.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0173989.1 Non Characterized Hit- tr|F7DS91|F7DS91_ORNAN
Uncharacterized protein (Fragment) OS=Ornithorhynchus
,39.76,0.0000000000006,RNA-binding domain, RBD,NULL; no
description,Nucleotide-binding, alpha-beta plait; RRM_1,RNA
recogni,NODE_30547_length_1349_cov_53.416603.path2.1
(323 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 501 e-142
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 496 e-140
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 338 5e-93
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 77 2e-14
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 68 1e-11
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 1e-11
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 1e-10
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 1e-10
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 63 3e-10
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 63 3e-10
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 4e-10
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 61 1e-09
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 61 2e-09
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 60 2e-09
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 59 6e-09
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 59 6e-09
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr5g017130.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 1e-08
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 57 2e-08
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 56 4e-08
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 56 5e-08
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 56 6e-08
Medtr7g109810.2 | flowering time control FCA-like protein | HC |... 56 6e-08
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 55 7e-08
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 55 7e-08
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 55 7e-08
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 8e-08
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 55 9e-08
Medtr7g109810.1 | flowering time control FCA-like protein | HC |... 55 1e-07
Medtr7g109810.3 | flowering time control FCA-like protein | HC |... 55 1e-07
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 54 3e-07
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 5e-07
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 52 6e-07
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 8e-07
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-07
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 49 5e-06
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 49 6e-06
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 49 7e-06
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 49 8e-06
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 1e-05
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 1e-05
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 501 bits (1289), Expect = e-142, Method: Compositional matrix adjust.
Identities = 255/325 (78%), Positives = 261/325 (80%), Gaps = 3/325 (0%)
Query: 1 MLPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHK 60
MLPKN+SEVEVSALFS YGTIKDLQILRGSQQTSKGCAFLKYETK+QALAALEAINGKHK
Sbjct: 110 MLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 169
Query: 61 MEGSSVPLVVKWADTXXXXXXXXXXXXXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGYG 120
MEGSSVPLVVKWADT NV H DSQHPSLFGAMPMGYVPPYNGYG
Sbjct: 170 MEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGH-DSQHPSLFGAMPMGYVPPYNGYG 228
Query: 121 YQAPGSYGLMPYRM-PPMQNQPGFHNMMPHMNHGNALRPDLGPSMNPRNYHVPPASYVSS 179
YQAPGSYGLMPYRM PPMQNQPG+HNMMPHMN GNALRPDLGP+MNPRNYHVPPASYV S
Sbjct: 229 YQAPGSYGLMPYRMPPPMQNQPGYHNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGS 288
Query: 180 YPAVPGLQHPMAY-HAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVEGPPGA 238
YPAVPGLQHPMAY Q EGPPGA
Sbjct: 289 YPAVPGLQHPMAYPGGMISPRPLNSPPGSVSPSGGNGNSATSSGSSKNSGGGQAEGPPGA 348
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
NLFIYHIPQEFGDQ+LANAFQPFGRV+SAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM
Sbjct: 349 NLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 408
Query: 299 MNGYQLGGKKLKVQHKRDNKPGKPY 323
MNG QLGGKKLKVQHKRDNKPGKPY
Sbjct: 409 MNGCQLGGKKLKVQHKRDNKPGKPY 433
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 2 LPKNVSEVEVSALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETKDQALAALEAINGKHK 60
+PK+++E E+ LF + + ++ I++ + + S+GC F+ ++D+A A+ A + K
Sbjct: 23 VPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKT 82
Query: 61 MEGSSVPLVVKWAD 74
+ G+S PL VK+AD
Sbjct: 83 LPGASSPLQVKYAD 96
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 496 bits (1277), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/326 (78%), Positives = 261/326 (80%), Gaps = 4/326 (1%)
Query: 1 MLPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSK-GCAFLKYETKDQALAALEAINGKH 59
MLPKN+SEVEVSALFS YGTIKDLQILRGSQQTSK GCAFLKYETK+QALAALEAINGKH
Sbjct: 110 MLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKH 169
Query: 60 KMEGSSVPLVVKWADTXXXXXXXXXXXXXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGY 119
KMEGSSVPLVVKWADT NV H DSQHPSLFGAMPMGYVPPYNGY
Sbjct: 170 KMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGH-DSQHPSLFGAMPMGYVPPYNGY 228
Query: 120 GYQAPGSYGLMPYRMPP-MQNQPGFHNMMPHMNHGNALRPDLGPSMNPRNYHVPPASYVS 178
GYQAPGSYGLMPYRMPP MQNQPG+HNMMPHMN GNALRPDLGP+MNPRNYHVPPASYV
Sbjct: 229 GYQAPGSYGLMPYRMPPPMQNQPGYHNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVG 288
Query: 179 SYPAVPGLQHPMAY-HAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVEGPPG 237
SYPAVPGLQHPMAY Q EGPPG
Sbjct: 289 SYPAVPGLQHPMAYPGGMISPRPLNSPPGSVSPSGGNGNSATSSGSSKNSGGGQAEGPPG 348
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
ANLFIYHIPQEFGDQ+LANAFQPFGRV+SAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS
Sbjct: 349 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 408
Query: 298 MMNGYQLGGKKLKVQHKRDNKPGKPY 323
MMNG QLGGKKLKVQHKRDNKPGKPY
Sbjct: 409 MMNGCQLGGKKLKVQHKRDNKPGKPY 434
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 2 LPKNVSEVEVSALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETKDQALAALEAINGKHK 60
+PK+++E E+ LF + + ++ I++ + + S+GC F+ ++D+A A+ A + K
Sbjct: 23 VPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKT 82
Query: 61 MEGSSVPLVVKWAD 74
+ G+S PL VK+AD
Sbjct: 83 LPGASSPLQVKYAD 96
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 338 bits (866), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 166/193 (86%), Positives = 170/193 (88%), Gaps = 2/193 (1%)
Query: 1 MLPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHK 60
MLPKN+SEVEVSALFS YGTIKDLQILRGSQQTSKGCAFLKYETK+QALAALEAINGKHK
Sbjct: 110 MLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 169
Query: 61 MEGSSVPLVVKWADTXXXXXXXXXXXXXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGYG 120
MEGSSVPLVVKWADT NV H DSQHPSLFGAMPMGYVPPYNGYG
Sbjct: 170 MEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGH-DSQHPSLFGAMPMGYVPPYNGYG 228
Query: 121 YQAPGSYGLMPYRM-PPMQNQPGFHNMMPHMNHGNALRPDLGPSMNPRNYHVPPASYVSS 179
YQAPGSYGLMPYRM PPMQNQPG+HNMMPHMN GNALRPDLGP+MNPRNYHVPPASYV S
Sbjct: 229 YQAPGSYGLMPYRMPPPMQNQPGYHNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGS 288
Query: 180 YPAVPGLQHPMAY 192
YPAVPGLQHPMAY
Sbjct: 289 YPAVPGLQHPMAY 301
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 2 LPKNVSEVEVSALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETKDQALAALEAINGKHK 60
+PK+++E E+ LF + + ++ I++ + + S+GC F+ ++D+A A+ A + K
Sbjct: 23 VPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKT 82
Query: 61 MEGSSVPLVVKWAD 74
+ G+S PL VK+AD
Sbjct: 83 LPGASSPLQVKYAD 96
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 2 LPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKM 61
L K S EV +FS YG I+D+ ++R Q+ S+GC F+KY +D ALAA+ A+NG + M
Sbjct: 186 LNKQASVKEVEEVFSKYGRIEDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALNGIYTM 245
Query: 62 EGSSVPLVVKWAD 74
G PL+V++AD
Sbjct: 246 RGCEQPLIVRFAD 258
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 2 LPKNVSEVEVSALFSNYGTIKDLQILRGSQQTS-KGCAFLKYETKDQALAALEAINGKHK 60
+P+ +E ++ LF +G + ++ +++ + +GC F+KY T ++A A+ A++ +H
Sbjct: 95 VPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNRHT 154
Query: 61 MEGSSVPLVVKWAD 74
+ G P+ V++AD
Sbjct: 155 LPGGVGPIQVRYAD 168
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
NL+I ++P D L FQ FG ++ AKV D+ TG+SK +GFV Y A +AI
Sbjct: 451 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIV 510
Query: 298 MMNGYQLGGKKLKVQ 312
MNGY+L G+ + V+
Sbjct: 511 AMNGYRLEGRTIAVR 525
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
+ LFI + DQ L +AF +G V+ A+V D+ TG S+ FGFV++ S E+A SA+S
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
Query: 298 MMNGYQLGGKKLKVQHKRDNKP 319
M+G L G+ ++V + D +
Sbjct: 96 -MDGQDLNGRNIRVSYANDRQA 116
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 236 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 295
P LF+ I +Q L++AF +G+V+ A++ +D+ +G SK FGFV+Y++ E A SA
Sbjct: 42 PNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSA 101
Query: 296 ISMMNGYQLGGKKLKVQHKRD 316
I ++G L G+++ V +
Sbjct: 102 IQALDGQDLYGRRVGVNFANE 122
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 236 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 295
P LF+ I +Q L++AF +G+V+ A++ +D+ +G SK FGFV+Y++ E A SA
Sbjct: 42 PNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSA 101
Query: 296 ISMMNGYQLGGKKLKVQHKRD 316
I ++G L G+++ V +
Sbjct: 102 IQALDGQDLYGRRVGVNFANE 122
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISA-KVFVDKATGVSKCFGFVSYDSPEAAQSA 295
GANLFI ++ + ++ L + F FG +++ K+ D TG S+ FGF+SYDS EA+ SA
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 170
Query: 296 ISMMNGYQLGGKKLKVQ--HKRDNK 318
I MNG L +++ V +K+D K
Sbjct: 171 IEAMNGQYLCNRQITVSYAYKKDTK 195
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
P N+++ +I + D+DL F PFG + SA V D A G S+CFGFV++ SP++A +
Sbjct: 206 PKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAA 264
Query: 295 AISMMNGYQLGGKKL 309
A+ +NG + K+
Sbjct: 265 AVEKLNGTAINDDKV 279
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 233 EGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAA 292
E GANL++ ++ +F ++ L + F FG V S +V +D + G SK GFV++ +PE A
Sbjct: 308 EKLQGANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLD-SHGHSKGSGFVAFSTPEEA 366
Query: 293 QSAISMMNGYQLGGKKLKV---QHKRDNK 318
A++ MNG +G K L V Q K + K
Sbjct: 367 NKALNEMNGKLVGRKPLFVAVAQRKEERK 395
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+FI ++ + L + F FG V+S KV +D G SK +GFV +D+ EAA+SAI
Sbjct: 119 NVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQ 177
Query: 299 MNGYQLGGKKLKV 311
++G + K++ V
Sbjct: 178 LDGMLINDKQVYV 190
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
P N+++ +I + D+DL F PFG + SA V D A G S+CFGFV++ SP++A +
Sbjct: 206 PKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAA 264
Query: 295 AISMMNGYQLGGKKL 309
A+ +NG + K+
Sbjct: 265 AVEKLNGTAINDDKV 279
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 233 EGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAA 292
E GANL++ ++ +F ++ L + F FG V S +V +D + G SK GFV++ +PE A
Sbjct: 308 EKLQGANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLD-SHGHSKGSGFVAFSTPEEA 366
Query: 293 QSAISMMNGYQLGGKKLKV---QHKRDNK 318
A++ MNG +G K L V Q K + K
Sbjct: 367 NKALNEMNGKLVGRKPLFVAVAQRKEERK 395
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+FI ++ + L + F FG V+S KV +D G SK +GFV +D+ EAA+SAI
Sbjct: 119 NVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQ 177
Query: 299 MNGYQLGGKKLKV 311
++G + K++ V
Sbjct: 178 LDGMLINDKQVYV 190
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
P LFI + + L AF +G V+ A++ +D+ TG S+ FGF++++S E A S
Sbjct: 39 APTTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASS 98
Query: 295 AISMMNGYQLGGKKLKVQH 313
AI ++G L G++++V +
Sbjct: 99 AIQALDGQDLHGRRVRVNY 117
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 236 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 295
P NLF+ + + + L AFQ FG V+ A+V D+ +G SK FGFV Y + E A
Sbjct: 49 PSTNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKG 108
Query: 296 ISMMNGYQLGGKKLKVQHKR--------DNKPGKPY 323
I M+G L G + ++ R N G+PY
Sbjct: 109 IEGMDGKFLEGWVIFAEYARPRPPPGEAVNNTGRPY 144
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
NL++ ++ + + L F FG++IS V D + G+SK FGFV++D+PE A+ A+
Sbjct: 189 TNLYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAME 247
Query: 298 MMNGYQLGGKKLKV 311
MNG QLG K L V
Sbjct: 248 TMNGLQLGSKILYV 261
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+F+ ++ + + L + F+ FG ++S+KV + + G SK +GFV +++ E+A +AI
Sbjct: 99 NVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSE-DGKSKGYGFVQFETEESANAAIER 157
Query: 299 MNGYQLGGKKLKV 311
+NGY +G K++ V
Sbjct: 158 LNGYLVGDKQIYV 170
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 231 QVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPE 290
QV G+N+++ +I D+ L + F G + SAK+ D G+SK FGFV + +PE
Sbjct: 285 QVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDD-KGISKGFGFVCFSTPE 343
Query: 291 AAQSAISMMNGYQLGGKKLKV---QHKRD 316
A A++ +G+ GK L V Q K D
Sbjct: 344 EANKAVNSFHGFMFHGKPLYVSLAQRKED 372
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
A+L++ + + D L +AF F + S ++ D ++G S C+G+V++ SP A AI
Sbjct: 10 ASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIE 69
Query: 298 MMNGYQLGGKKLKVQHKRDN 317
+ N L GK ++V R +
Sbjct: 70 VKNHSTLNGKAIRVMWSRRD 89
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 296
AN+FI ++ + + L + F FG ++S K+ +D A+G+SK +GFV +++ E+AQSAI
Sbjct: 111 AANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAI 169
Query: 297 SMMNGYQLGGKKLKVQH-----KRDN 317
+NG L K + V H RDN
Sbjct: 170 DKLNGMLLNDKPVYVGHFQRKQDRDN 195
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 296
GANL++ ++ D+ L+ F FG V S K+ D G+S+ GFV++ +PE A A+
Sbjct: 305 GANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRD-PQGISRGSGFVAFSTPEEATRAL 363
Query: 297 SMMNGYQLGGKKLKV---QHKRDNK 318
+ MNG + GK L V Q K + K
Sbjct: 364 AEMNGKMVAGKPLYVAPAQKKEERK 388
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 2 LPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGK 58
L +V++ ++S LFS +GT+ +ILR Q S+G F+ + T ++A AL +NGK
Sbjct: 313 LDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGK 369
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 233 EGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAA 292
E GANL++ ++ + D+ L F FG + S KV D A G SK FGFV++ + E A
Sbjct: 204 EKLQGANLYLKNLDESINDEKLKEMFSEFGTITSCKVMFD-AHGHSKGFGFVAFSTSEEA 262
Query: 293 QSAISMMNGYQLGGKKLKV---QHKRDNK 318
AI+ M+G +G K L V Q K D K
Sbjct: 263 SKAINGMSGKIIGQKPLYVVVAQRKEDRK 291
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
P N+++ ++ + D+DL F +G VI++ V + G SKCFGFV++ SP++A +
Sbjct: 102 PKFTNVYVKNLLETDTDEDLKKLFSTYG-VITSAVIMKDENGNSKCFGFVNFQSPDSAAA 160
Query: 295 AISMMNG 301
A+ +NG
Sbjct: 161 AVEKLNG 167
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
AN+F+ ++ ++ L + F FG V+S KV +D + G S +GFV YD+ E+A+ AI
Sbjct: 15 ANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALD-SNGKSLGYGFVQYDNHESAKCAIE 73
Query: 298 MMNGYQLGGKK 308
++G + KK
Sbjct: 74 KLDGMLIKDKK 84
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
P G+ +FI +P++ D D+ +P G ++ K+ D+ TG SK + FV Y + E AQ
Sbjct: 101 PHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQK 160
Query: 295 AISMMNGYQLGGKKLKV 311
AI ++ + GK L+
Sbjct: 161 AIDDIHNKEFKGKTLRC 177
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
P G+ +FI +P++ D D+ +P G ++ K+ D+ TG SK + FV Y + E AQ
Sbjct: 101 PHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQK 160
Query: 295 AISMMNGYQLGGKKLKV 311
AI ++ + GK L+
Sbjct: 161 AIDDIHNKEFKGKTLRC 177
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
P G+ +FI +P++ D D+ +P G ++ K+ D+ TG SK + FV Y + E AQ
Sbjct: 101 PHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQK 160
Query: 295 AISMMNGYQLGGKKLKV 311
AI ++ + GK L+
Sbjct: 161 AIDDIHNKEFKGKTLRC 177
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
A LFI + + L AF +G V+ AK+ +D+ TG S+ FGF+++ + E A SA+
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 298 MMNGYQLGGKKLKVQHKRDN-KPG 320
M+ +L G+ ++V + + +PG
Sbjct: 100 AMDNKELDGRTVRVNYATERARPG 123
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
A LFI + + L AF +G V+ AK+ +D+ TG S+ FGF+++ + E A SA+
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 298 MMNGYQLGGKKLKVQHKRDN-KPG 320
M+ +L G+ ++V + + +PG
Sbjct: 100 AMDNKELDGRTVRVNYATERARPG 123
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+FI ++ + + L + F FG ++S KV VD +G SK +GFV +D+ EAAQ AI
Sbjct: 123 NIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEK 181
Query: 299 MNGYQLGGKKLKV 311
+NG L K++ V
Sbjct: 182 LNGMLLNDKQVYV 194
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 296
GANL++ ++ D+ L F +G + S KV D GVS+ GFV++ +PE A A+
Sbjct: 315 GANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRD-PNGVSRGSGFVAFSTPEEASRAL 373
Query: 297 SMMNGYQLGGKKLKV---QHKRDNK 318
MNG + K L V Q K D +
Sbjct: 374 LEMNGKMVASKPLYVTLAQRKEDRR 398
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+F+ ++ + D +L F FG + SA V D G SKCFGFV+++S + A A+
Sbjct: 214 NVFVKNLSESTTDDELKKTFGEFGTITSAVVMRD-GDGKSKCFGFVNFESTDDAARAVEA 272
Query: 299 MNGYQLGGKKLKV 311
+NG ++ K+ V
Sbjct: 273 LNGKKIDDKEWYV 285
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 296
GANL++ +I + ++ L F FG + S KV D A G SK GFV++ +PE A AI
Sbjct: 303 GANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSD-ARGRSKGVGFVAFTTPEEASKAI 361
Query: 297 SMMNGYQLGGKKLKV---QHKRDNK 318
MNG +G K + V Q K + K
Sbjct: 362 DEMNGKIIGQKPVYVSVAQRKEERK 386
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
ANLFI ++ ++ L F FG V+S KV +D + G SK GFV +D+ ++A++AI
Sbjct: 113 ANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKNAIE 171
Query: 298 MMNGYQLGGKKLKV 311
++G + KK+ V
Sbjct: 172 KLDGMLMNDKKVYV 185
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 41/60 (68%)
Query: 254 LANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQH 313
L AF +G V+ A++ +D+ TG S+ FGF++++S E A SAI ++G L G++++V +
Sbjct: 66 LREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDGQDLHGRRVRVNY 125
>Medtr5g017130.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr5:6226873-6227520 | 20130731
Length = 176
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 244 HIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQ 303
++P E + DL FQPFG VI A + + + TG+S F FV++ + EAAQSAI +NG
Sbjct: 101 NLPPETRNHDLLQLFQPFGHVIGADIAIAQHTGLSGRFAFVNFATKEAAQSAIERLNGID 160
Query: 304 LGGKKLKVQ 312
L+V+
Sbjct: 161 YHNFILRVE 169
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
LFI + + D+ L AF PFG+++ AKV D+ +G SK F FVSY + E A+ A
Sbjct: 36 KLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREG 95
Query: 299 MNGYQLGG 306
MN L G
Sbjct: 96 MNAKFLDG 103
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+++ ++ + F + DL N F +G + SA V + A G SKCFGFV++++ E A A+
Sbjct: 212 NVYVKNLSESFTEDDLKNEFGAYGTITSA-VLMRDADGRSKCFGFVNFENAEDAAKAVEA 270
Query: 299 MNGYQLGGKKLKV 311
+NG ++ K+ V
Sbjct: 271 LNGKKVDDKEWYV 283
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
AN+FI ++ + + L + F FG+++S K+ D +G SK +GFV +++ ++AQ+AI
Sbjct: 120 ANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAID 178
Query: 298 MMNGYQLGGKKLKVQH-----KRDN 317
+NG + K++ V H RDN
Sbjct: 179 KLNGMLINDKQVFVGHFLRKQDRDN 203
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 296
G NL++ ++ D+ L F FG + S K+ D GVS+ GFV++ +PE A A+
Sbjct: 314 GLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRD-PNGVSRGSGFVAFSTPEEASRAL 372
Query: 297 SMMNGYQLGGKKLKV---QHKRDNK 318
MNG + K L V Q K D +
Sbjct: 373 GEMNGKMIVSKPLYVAVAQRKEDRR 397
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
+ LFI + DQ L +AF +G V+ A+V D+ TG S+ FGFV++ S E+A SA+S
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
Query: 298 M 298
M
Sbjct: 96 M 96
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
LF+ ++ + L AFQ G V+ A+V D TG S+ +GFVSY + +A+++M
Sbjct: 206 LFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIM 265
Query: 300 NGYQLGGKKLKV---QHKR 315
+ +L G+ L+V Q KR
Sbjct: 266 DNVELEGRTLRVSLAQGKR 284
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 232 VEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEA 291
V P A L++ + + D L AF F +ISA+V D ATG S C+G+V+ S +
Sbjct: 9 VPASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQE 68
Query: 292 AQSAISMMNGYQLGGKKLKV 311
A AI + N L GK ++V
Sbjct: 69 AIRAIELKNHSSLNGKVIRV 88
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 296
G+N+++ +I GD++L + F G V+SAKV D G SK FGFV + + A ++
Sbjct: 292 GSNIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDD-KGTSKGFGFVCFSTVVEAFKSM 350
Query: 297 SMMNGYQLGGKKLKV---QHKRDNK 318
S NG GK L V Q K D K
Sbjct: 351 SCFNGCMFHGKPLYVDFAQKKEDRK 375
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
NL++ ++ ++ L F FG+++S + D+ G SK FGFV+YDSP+ A+ A+
Sbjct: 194 TNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDE-NGQSKGFGFVNYDSPDDARRAME 252
Query: 298 MMNGYQLGGKKLKV 311
M+G Q G K L V
Sbjct: 253 AMDGSQFGSKILYV 266
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 242 IYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNG 301
+ ++ ++ + DL F+PFG V V +D+ TG+S+ FGFV++ S E AQ AI+ +NG
Sbjct: 215 VTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLNG 274
Query: 302 YQLGGKKLKVQ 312
Y L+V+
Sbjct: 275 YGYDNLILRVE 285
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
+F+ IP +F + D+ F +G V+ + DK TG SK F F++Y+ + A+ +
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 300 NGYQLGGKKLKVQH 313
NG Q+ G+ ++V H
Sbjct: 98 NGAQVSGRIIRVDH 111
>Medtr7g109810.2 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 385
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 2 LPKNVSEVEVSALFSNYGTIKDLQILRGSQQ-TSKGCAFLKYETKDQALAALEAINGKHK 60
+P+ SE +V +F YGTI ++ +LR +G +KY T D+A A++A++ ++
Sbjct: 81 VPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKALSNQYT 140
Query: 61 MEGSSVPLVVKWAD 74
G S P+VV++AD
Sbjct: 141 FPGESSPVVVRFAD 154
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 232 VEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEA 291
VE P A LF+ + P + + LA F G V A+V ++ T +S+ FGFV+ + E
Sbjct: 103 VEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEE 162
Query: 292 AQSAISMMNGYQLGGKKLKV 311
A+SA+ NGY G+ L V
Sbjct: 163 AESAVEKFNGYDYNGRSLVV 182
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 236 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 295
P +++ ++ E + L F G+++SA+V D+ TG S+ FGFV+ A
Sbjct: 204 PVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDA 263
Query: 296 ISMMNGYQLGGKKLKVQHKRD 316
I+ ++G L G+ ++V D
Sbjct: 264 IAALDGQSLEGRTIRVSVAED 284
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 232 VEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEA 291
VE P A LF+ + P + + LA F G V A+V ++ T +S+ FGFV+ + E
Sbjct: 103 VEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEE 162
Query: 292 AQSAISMMNGYQLGGKKLKV 311
A+SA+ NGY G+ L V
Sbjct: 163 AESAVEKFNGYDYNGRSLVV 182
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
L++ ++P LA+ F G V+S ++ D+ T S+ F FV+ S E A+ AI M
Sbjct: 111 LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMF 170
Query: 300 NGYQLGGKKLKV 311
+G Q+GG+ KV
Sbjct: 171 DGSQVGGRSAKV 182
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 232 VEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEA 291
+ A L++ I D L +F +G V+ A+V +D+ G SK FGFV++ + E
Sbjct: 34 IRSMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEE 93
Query: 292 AQSAISMMNGYQLGGKKLKVQHKRDN 317
A +A+ M+ +L G+ ++V + ++
Sbjct: 94 ASAALQAMDNQELHGRTVRVNYAQER 119
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
+F+ +IP + ++ L + G VIS ++ D+ TG K +GF Y E A SA
Sbjct: 30 TVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRN 89
Query: 299 MNGYQLGGKKLKVQHKRDNK 318
+ GY++ G++L+V ++K
Sbjct: 90 LQGYEINGRQLRVDFAENDK 109
>Medtr7g109810.1 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 498
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 2 LPKNVSEVEVSALFSNYGTIKDLQILRGSQQ-TSKGCAFLKYETKDQALAALEAINGKHK 60
+P+ SE +V +F YGTI ++ +LR +G +KY T D+A A++A++ ++
Sbjct: 81 VPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKALSNQYT 140
Query: 61 MEGSSVPLVVKWAD 74
G S P+VV++AD
Sbjct: 141 FPGESSPVVVRFAD 154
>Medtr7g109810.3 | flowering time control FCA-like protein | HC |
chr7:44985779-44980846 | 20130731
Length = 288
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 2 LPKNVSEVEVSALFSNYGTIKDLQILRGSQQ-TSKGCAFLKYETKDQALAALEAINGKHK 60
+P+ SE +V +F YGTI ++ +LR +G +KY T D+A A++A++ ++
Sbjct: 81 VPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKALSNQYT 140
Query: 61 MEGSSVPLVVKWAD 74
G S P+VV++AD
Sbjct: 141 FPGESSPVVVRFAD 154
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 231 QVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPE 290
+ E LF+ ++P LA F G V+S ++ D T S+ F FV+ + E
Sbjct: 101 EAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVE 160
Query: 291 AAQSAISMMNGYQLGGKKLKV 311
A+ AI M +G +GG+ +KV
Sbjct: 161 DAEEAIRMFDGTTVGGRAIKV 181
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 231 QVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPE 290
+ E LF+ ++P LA F G V+S ++ D T S+ F FV+ + E
Sbjct: 101 EAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVE 160
Query: 291 AAQSAISMMNGYQLGGKKLKV 311
A+ AI M +G +GG+ +KV
Sbjct: 161 DAEEAIRMFDGTTVGGRAIKV 181
>Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:31620260-31623626 | 20130731
Length = 270
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 236 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 295
PG L++ + D+DL + F G+V S + V+ T +S+ F FV+ DS E A+
Sbjct: 60 PGNTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERC 119
Query: 296 ISMMNGYQLGGKKLKVQHKRDNKPGKP 322
I +N L G+ + V+ R + P
Sbjct: 120 IKHLNQSVLEGRYITVERSRRKRARTP 146
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+F+ + E D L F + A+V D+ TG S+ FGFVS+ S + AQSAI+
Sbjct: 148 NIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIND 207
Query: 299 MNGYQLGGKKLKV 311
+ G LG ++++
Sbjct: 208 LTGKWLGSRQIRC 220
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 232 VEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEA 291
V+ P L++ +IP+ + +L Q G V A+V DK + S+ F FV+ + E
Sbjct: 54 VDSPALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVED 113
Query: 292 AQSAISMMNGYQLGGKKLKV 311
A +A +NG ++GG+++KV
Sbjct: 114 ANAAAEKLNGTEIGGREIKV 133
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 252 QDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKV 311
Q L AF FG + +KV D+ TG S+ FGFV++ ++ + AI MNG + G+ + V
Sbjct: 22 QALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEMNGQDIDGRNITV 81
Query: 312 QH 313
Sbjct: 82 NE 83
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 242 IYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNG 301
+ ++ ++ + DL F FG V V +DK TG S+ FGFV++ + E AQ AI+ +NG
Sbjct: 203 VTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAINKLNG 262
Query: 302 YQLGGKKLKVQ 312
Y LKV+
Sbjct: 263 YGYDNLILKVE 273
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
LF+ + ++ L++AF +G+V+ AKV D+ + SK +GFV++ S + A+ AI+ M
Sbjct: 34 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93
Query: 300 NGYQLGGKKLKVQHKR 315
N L G+ + V + +
Sbjct: 94 NEKALNGRVVFVDYAK 109
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 254 LANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQH 313
L AF +G ++ +K+ D+ TG S+ FGFV++ + ++ AI MNG L G+ + V
Sbjct: 22 LEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMNGQDLDGRNITVNQ 81
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 254 LANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQH 313
L AF +G ++ +K+ D+ TG S+ FGFV++ + ++ AI MNG L G+ + V
Sbjct: 22 LEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMNGQDLDGRNITVNQ 81
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
LF+ + ++ L +AF FG V ++ DK +G ++ FGFV + + +AA+SA M
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 300 NGYQLGGKKLKVQHKRDNKPGKP 322
+G L G+ L++ + G P
Sbjct: 98 DGKALLGRPLRINFALEKPRGIP 120
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 254 LANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQH 313
L AF +G +I +K+ D+ TG S+ FGFV++ ++ + AI MNG + G+ + V
Sbjct: 24 LEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQDMDGRNITVNE 83
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
LF+ + ++ L AF+ FG ++ KV +DK + SK + F+ Y + EAA +A+ M
Sbjct: 194 LFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEM 253
Query: 300 NGYQLGG 306
NG + G
Sbjct: 254 NGKIING 260
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 296
G LF+ + Q L + F PFG + A + D+ T K FGFVSY S A+ A
Sbjct: 6 GTKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKAR 65
Query: 297 SMMNGYQLGGKKLKVQHKR 315
+NG + G+ + V+H +
Sbjct: 66 KALNGRIVDGRLIFVEHAK 84
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
+F+ +P F + + Q FG + S + DK TG SK +GF Y P A + +
Sbjct: 180 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 239
Query: 300 NGYQLGGKKLKVQHKRDNKPGKP 322
NG ++G K L V+ + KP
Sbjct: 240 NGLKMGDKTLTVRRATVSAHSKP 262
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
+F+ +P F + + Q FG + S + DK TG SK +GF Y P A + +
Sbjct: 137 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 196
Query: 300 NGYQLGGKKLKVQHKRDNKPGKP 322
NG ++G K L V+ + KP
Sbjct: 197 NGLKMGDKTLTVRRATVSAHSKP 219
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
+F+ +P F + + Q FG + S + DK TG SK +GF Y P A + +
Sbjct: 300 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 359
Query: 300 NGYQLGGKKLKVQHKRDNKPGKP 322
NG ++G K L V+ + KP
Sbjct: 360 NGLKMGDKTLTVRRATVSAHSKP 382
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
+F+ +P F + + Q FG + S + DK TG SK +GF Y P A + +
Sbjct: 285 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 344
Query: 300 NGYQLGGKKLKVQHKRDNKPGKP 322
NG ++G K L V+ + KP
Sbjct: 345 NGLKMGDKTLTVRRATVSAHSKP 367
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 236 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 295
P LF+ ++P LA F+ G V +V DK+TG S+ FGFV+ S ++A
Sbjct: 82 PNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAA 141
Query: 296 ISMMNGYQLGGKKLKV 311
+NGY + G++L+V
Sbjct: 142 AQQLNGYVVDGRELRV 157
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 236 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 295
P LF+ ++P LA F+ G V +V DK+TG S+ FGFV+ S ++A
Sbjct: 82 PNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAA 141
Query: 296 ISMMNGYQLGGKKLKV 311
+NGY + G++L+V
Sbjct: 142 AQQLNGYVVDGRELRV 157