Miyakogusa Predicted Gene

Lj0g3v0173589.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0173589.1 CUFF.10895.1
         (119 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g034935.1 | F-box protein | HC | chr6:12225876-12224238 | ...   140   4e-34
Medtr6g049050.1 | F-box protein | HC | chr6:17774212-17775602 | ...   123   3e-29

>Medtr6g034935.1 | F-box protein | HC | chr6:12225876-12224238 |
           20130731
          Length = 390

 Score =  140 bits (352), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 85/117 (72%), Gaps = 11/117 (9%)

Query: 1   MVLTELAALYYSAVSDTDNSN--NRWMKFSSNLPSKPRSPVLVGDSAFALCEVGS----- 53
           MVLTELAA Y++    +D+++  + W KFSSNLPSKPRSPVL+ D A+ALCEVGS     
Sbjct: 177 MVLTELAAFYFAGHGSSDDNDKISSWQKFSSNLPSKPRSPVLIEDWAYALCEVGSPWRSQ 236

Query: 54  ----RRVAPALAKKSWSRLERNEWGDVFDILKRPRLVRGAGDRVLMVGGLKSSFSLN 106
                    A     WSR+ER EWGDVFDILKRPRLVRG G+R+LM+GGLKSSFSLN
Sbjct: 237 WKLFSCCFSATTSGKWSRIERQEWGDVFDILKRPRLVRGVGNRILMIGGLKSSFSLN 293


>Medtr6g049050.1 | F-box protein | HC | chr6:17774212-17775602 |
           20130731
          Length = 365

 Score =  123 bits (309), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/116 (52%), Positives = 82/116 (70%), Gaps = 12/116 (10%)

Query: 1   MVLTELAALYYSAVSDTDNSNNRWMKFSSNLPSKPRSPVLVGDSAFALCEVGSRR----- 55
           M+LTE A  Y+S   D+++S + W K SSNLPSKPRSP+L+ DSA+ LC VGSR+     
Sbjct: 155 MILTEFAIYYFSG--DSNDSTHGWQKLSSNLPSKPRSPILIEDSAYVLCNVGSRQRSEWK 212

Query: 56  -----VAPALAKKSWSRLERNEWGDVFDILKRPRLVRGAGDRVLMVGGLKSSFSLN 106
                V  A++  +WSRL R E G VFDILKRP++VRG G+++L++G LKS+F LN
Sbjct: 213 LFSCCVTSAISHVTWSRLTRPECGVVFDILKRPQIVRGVGNKILIIGSLKSTFKLN 268