Miyakogusa Predicted Gene

Lj0g3v0173489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0173489.1 Non Characterized Hit- tr|K4BCC9|K4BCC9_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,60.94,5e-17,UPF0121,Uncharacterised protein family UPF0121;
seg,NULL; RNA POLYMERASE SIGMA FACTOR
RPO,NULL,NODE_43711_length_1065_cov_254.821594.path1.1
         (346 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g016780.1 | plant/F16B3-5 protein | HC | chr6:6454223-6447...   499   e-141

>Medtr6g016780.1 | plant/F16B3-5 protein | HC | chr6:6454223-6447946
           | 20130731
          Length = 348

 Score =  499 bits (1285), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/348 (72%), Positives = 269/348 (77%), Gaps = 2/348 (0%)

Query: 1   MGEEREDPQKLKKLXXXXXXXXXXXRWPDYWANVLIPPNMASRSDVVSHYKRKFYQRHVD 60
           MG E+EDPQKLK+L           RWPDYW NVLIPP+M+SR DVVSH+KRKFYQR++D
Sbjct: 1   MGSEKEDPQKLKRLAADSYDYDSDSRWPDYWNNVLIPPHMSSRQDVVSHFKRKFYQRYLD 60

Query: 61  PDLVVEPMNFGXXXXXXXXXXXXXXXXXXXX-NDQVXXXXXXXX-XXXXXXXXXXXPNST 118
            DLVVEPM+                       NDQ                     PN  
Sbjct: 61  NDLVVEPMSLSSSSQPPRPPATSSSSSPPPRSNDQARARSTGSTNRTSGTSATSVGPNPA 120

Query: 119 PLRWDRQTILFSVNAWXXXXXXXXXXXXXXRHLSQRAYRLSFMGTTCSSLYSLYSQYGKP 178
           PLRWDRQTILFSVNAW              +HLS RAYRLSFMGTTCSSLYSLYSQYGKP
Sbjct: 121 PLRWDRQTILFSVNAWVLVVAFLAAVPIIPKHLSHRAYRLSFMGTTCSSLYSLYSQYGKP 180

Query: 179 RAWNLQALQVYFQSIIAAKDFIYFIYCLTFVTSHLCLKFALIPIICWAFENVAKFLRRNF 238
           RAWN+QALQVYFQSIIA KDFIYF+YCLTFVTSHLCLKFALIPI+CW+FE+VAKFLRRNF
Sbjct: 181 RAWNMQALQVYFQSIIATKDFIYFVYCLTFVTSHLCLKFALIPILCWSFEHVAKFLRRNF 240

Query: 239 SRSTLYRKYLEEPCVWVESNNMTLNILTSHAEIGLGFLLVISLFSWQRNIIQTFMYWQLL 298
           SRSTLYRKYLEEPCVWVESNN TLNILTSHAEIGLGFLLV+SLFSWQRNIIQTFMYWQLL
Sbjct: 241 SRSTLYRKYLEEPCVWVESNNTTLNILTSHAEIGLGFLLVLSLFSWQRNIIQTFMYWQLL 300

Query: 299 KLMYNVPVTAAYHQSVWAKIGRTVNPLIHSHAPFLKTPLSAVQRWWLR 346
           KLMY+VPVTAAYHQSVWAKIGR++NPLIH HAPFLKTPLSAVQRWWLR
Sbjct: 301 KLMYHVPVTAAYHQSVWAKIGRSINPLIHRHAPFLKTPLSAVQRWWLR 348