Miyakogusa Predicted Gene

Lj0g3v0171439.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0171439.1 Non Characterized Hit- tr|I1NH37|I1NH37_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,89.14,0,60S RIBOSOMAL
PROTEIN L3-RELATED,NULL; seg,NULL; no description,NULL;
Ribosomal_L3,Ribosomal protein,CUFF.11615.1
         (286 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g098540.1 | 60S ribosomal protein L3B | HC | chr1:44369848...   501   e-142
Medtr1g098540.3 | 60S ribosomal protein L3B | HC | chr1:44369862...   501   e-142
Medtr1g098540.2 | 60S ribosomal protein L3B | HC | chr1:44369877...   501   e-142
Medtr4g094398.1 | 60S ribosomal protein L3B | HC | chr4:37890257...   481   e-136

>Medtr1g098540.1 | 60S ribosomal protein L3B | HC |
           chr1:44369848-44366402 | 20130731
          Length = 389

 Score =  501 bits (1291), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/283 (87%), Positives = 262/283 (92%)

Query: 1   MSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPSKSPKLTAFLGYKAGMTHIVREV 60
           MSHRKFEHPRHGSLGFLPRKRAARHRGKVK+FPKDDP+K PKLTAFLGYKAGMTHIVREV
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREV 60

Query: 61  EKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGMRTLNTVWAQHLSEEVKRRFYX 120
           EKPGSKLHKKETCEPVTIIETPPMV+VGVVGYVKTPRG+RTLNTVW QHLSEE+KRRFY 
Sbjct: 61  EKPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYK 120

Query: 121 XXXXXXXXXXXXXXXQFESEEGKKNVQAQLEKIKKYATVVRVLAHTQIRKMKGLKQKKAH 180
                          Q+ES+EGKKN+Q QLEK+KKYATV+RVLAHTQIRKMKGLKQKKAH
Sbjct: 121 NWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYATVIRVLAHTQIRKMKGLKQKKAH 180

Query: 181 IMEIQVNGGTVAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
           IMEIQVNGGT+AQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 IMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240

Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRSAITE 283
           LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHR+ + +
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNK 283


>Medtr1g098540.3 | 60S ribosomal protein L3B | HC |
           chr1:44369862-44366386 | 20130731
          Length = 389

 Score =  501 bits (1291), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/283 (87%), Positives = 262/283 (92%)

Query: 1   MSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPSKSPKLTAFLGYKAGMTHIVREV 60
           MSHRKFEHPRHGSLGFLPRKRAARHRGKVK+FPKDDP+K PKLTAFLGYKAGMTHIVREV
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREV 60

Query: 61  EKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGMRTLNTVWAQHLSEEVKRRFYX 120
           EKPGSKLHKKETCEPVTIIETPPMV+VGVVGYVKTPRG+RTLNTVW QHLSEE+KRRFY 
Sbjct: 61  EKPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYK 120

Query: 121 XXXXXXXXXXXXXXXQFESEEGKKNVQAQLEKIKKYATVVRVLAHTQIRKMKGLKQKKAH 180
                          Q+ES+EGKKN+Q QLEK+KKYATV+RVLAHTQIRKMKGLKQKKAH
Sbjct: 121 NWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYATVIRVLAHTQIRKMKGLKQKKAH 180

Query: 181 IMEIQVNGGTVAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
           IMEIQVNGGT+AQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 IMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240

Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRSAITE 283
           LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHR+ + +
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNK 283


>Medtr1g098540.2 | 60S ribosomal protein L3B | HC |
           chr1:44369877-44366402 | 20130731
          Length = 389

 Score =  501 bits (1291), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/283 (87%), Positives = 262/283 (92%)

Query: 1   MSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPSKSPKLTAFLGYKAGMTHIVREV 60
           MSHRKFEHPRHGSLGFLPRKRAARHRGKVK+FPKDDP+K PKLTAFLGYKAGMTHIVREV
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREV 60

Query: 61  EKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGMRTLNTVWAQHLSEEVKRRFYX 120
           EKPGSKLHKKETCEPVTIIETPPMV+VGVVGYVKTPRG+RTLNTVW QHLSEE+KRRFY 
Sbjct: 61  EKPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYK 120

Query: 121 XXXXXXXXXXXXXXXQFESEEGKKNVQAQLEKIKKYATVVRVLAHTQIRKMKGLKQKKAH 180
                          Q+ES+EGKKN+Q QLEK+KKYATV+RVLAHTQIRKMKGLKQKKAH
Sbjct: 121 NWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYATVIRVLAHTQIRKMKGLKQKKAH 180

Query: 181 IMEIQVNGGTVAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
           IMEIQVNGGT+AQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 IMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240

Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRSAITE 283
           LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHR+ + +
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNK 283


>Medtr4g094398.1 | 60S ribosomal protein L3B | HC |
           chr4:37890257-37894814 | 20130731
          Length = 389

 Score =  481 bits (1238), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/304 (78%), Positives = 265/304 (87%), Gaps = 18/304 (5%)

Query: 1   MSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPSKSPKLTAFLGYKAGMTHIVREV 60
           MSHRKFEHPRHGSLGFLPRKRAARHRGKVK+FPKDDP+K  +LTAF+GYK+GMTHIVREV
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPCRLTAFVGYKSGMTHIVREV 60

Query: 61  EKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGMRTLNTVWAQHLSEEVKRRFYX 120
           EKPGSKLHKKETCE VTIIETPP+V+VGVVGYVKTPRG+RTLNTVWAQHLSE+VKRRFY 
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPPIVVVGVVGYVKTPRGLRTLNTVWAQHLSEDVKRRFYK 120

Query: 121 XXXXXXXXXXXXXXXQFESEEGKKNVQAQLEKIKKYATVVRVLAHTQIRKMKGLKQKKAH 180
                          ++E++EGKK++Q QLEK+KKYATV+RVLAHTQ+RK+KGLKQKKAH
Sbjct: 121 NWAKSKKKAFTKYTKKYETDEGKKDIQTQLEKLKKYATVIRVLAHTQVRKLKGLKQKKAH 180

Query: 181 IMEIQVNGGTVAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
           +MEIQVNGGTV QKVD+AY+FFEKQ+P+DAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LMEIQVNGGTVNQKVDYAYNFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240

Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHR------------------SAIT 282
           LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHR                  +AIT
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVGKQDQESHTAIT 300

Query: 283 EFDR 286
           EFDR
Sbjct: 301 EFDR 304